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2022 DFO Pacific Science Publications

We are pleased to continue to provide Canadians with the Pacific Region's science publications, and to continue the ongoing communication of high quality research with this list of 2022 Pacific Science Publications. Below you will find primary and secondary peer reviewed publications published in 2022 which involve at least one DFO Science Branch author from the Pacific Region. The links provided to this research are hosted by third party publishers, as such journals may only be available in English.

Title Keywords
Stockdale, J. E., Anderson, S. C., Edwards, A. M., Iyaniwura, S. A., Mulberry, N., Otterstatter, M. C., Janjua, N. Z., Coombs, D., Colijn, C., & Irvine, M. A. (2022). Quantifying transmissibility of SARS-CoV-2 and impact of intervention within long-term healthcare facilities. Royal Society Open Science, 9(1), 211710-211710. https://doi.org/10.1098/rsos.211710 COVID-19, reproduction number, outbreak modelling, transmissibility, long-term health care
English, P., E.J. Ward, C.N. Rooper, R.E. Forrest, L.A. Rogers, K.L. Hunter, A.M. Edwards, B.M. Connors, S.C. Anderson. 2021. Contrasting climate velocity impacts in warm and cool locations show that effects of marine warming are worse in already warmer temperate waters. Fish and Fisheries. 23(1) 239–255. https://doi.org/10.1111/faf.12613. biotic velocity, climate change, context dependence, dissolved oxygen, groundfish, spatio-temporal distribution models
Robinson, C. L. K., Yakimishyn, J., & Evans, R. (2022). Minimal effects of the 2014-16 marine heatwave on fish assemblages found in eelgrass meadows on the southwestern coast of vancouver island, british columbia, canada. Frontiers in Marine Science, 9https://doi.org/10.3389/fmars.2022.980703 marine heatwave (MHW), eelgrass (Zostera marina), fish assemblage, control chart, coastal
Zaiko, A., Greenfield, P., Abbott, C., von Ammon, U., Bilewitch, J., Bunce, M., Cristescu, M. E., Chariton, A., Dowle, E., Geller, J., Ardura Gutierrez, A., Hajibabaei, M., Haggard, E., Inglis, G. J., Lavery, S. D., Samuiloviene, A., Simpson, T., Stat, M., Stephenson, S., Sutherland, J., … Pochon, X. (2022). Towards reproducible metabarcoding data: Lessons from an international cross-laboratory experiment. Molecular ecology resources, 22(2), 519–538. https://doi.org/10.1111/1755-0998.13485 18S ribosomal rRNA (18S rRNA), high-throughput sequencing, metabarcoding, mitochondrial cytochrome c oxidase subunit 1 (COI), reproducibility, standardization
Thompson, P., Anderson, S., Nephin, J., Haggarty, D., Peña, M., English, P., Gale, K., & Rubidge, E. (2022). Disentangling the impacts of environmental change and commercial fishing on demersal fish biodiversity in a northeast pacific ecosystem. Marine Ecology. Progress Series (Halstenbek), 689, 137-154. https://doi.org/10.3354/meps14034 biodiversity change, environmental change, groundfish, ecosystem-based management, marine spatial planning, temperature, fishing, species richness, community biomass
Freshwater, C., Parken, C.K., Tucker, S., Velez-Espino, L. A., King, J. (2022). Non-stationary patterns in demographic traits covary with Chinook salmon marine distributions. Canadian Journal of Fisheries and Aquatic Sciences. https://doi.org/10.1139/cjfas-2021-0312 age-at-maturity, survival, Chinook salmon, population productivity
Gale, K. S. P., Forrest, R. E., Rooper, C. N., Nephin, J., Wallace, S., Driscoll, J., & Rubidge, E. (2022). Evaluation of collaboratively developed management measures to reduce coral and sponge bycatch in a fully monitored multispecies trawl fishery. Canadian Journal of Fisheries and Aquatic Sciences, 79(9), 1420-1434. https://doi.org/10.1139/cjfas-2021-0274 vulnerable marine ecosystem, environmental impacts, spatial management, continental shelf
McLaskey, A. K., Forster, I., Belluz, J. D. B., & Hunt, B. P. (2022). A high-resolution time series of particulate matter fatty acids reveals temporal dynamics of the composition and quality available to zooplankton in a temperate coastal ocean. Progress in Oceanography, 206, 102843. food quality, nutrition, stable isotopes, phytoplankton, trophic markers, pelagic food web, Canada, British Columbia, Strait of Georgia
Du Preez, C., Gartner, H., Watts, J., Clark, L., Du Preez, S., & Norgard, T. (2023). Salmon shark (lamna ditropis) scratching behaviour using floating anthropogenic debris. Canadian Field-Naturalist, 136(3), 274-280. https://doi.org/10.22621/cfn.v136i3.2949 scratching, salmon shark, animal behaviour, changing ocean, parasites, traditional ecological knowledge, drone, shark, Lamna ditropis, marine pollution
Hunsicker, M. E., Ward, E. J., Litzow, M. A., Anderson, S. C., Harvey, C. J., Field, J. C., Gao, J., Jacox, M. G., Melin, S., Thompson, A. R., & Warzybok, P. (2022). Tracking and forecasting community responses to climate perturbations in the california current ecosystem. PLOS Climate, 1(3), e0000014. https://doi.org/10.1371/journal.pclm.0000014 marine ecosystems, marine fish, California, fish biology, marine biology, ecosystems, larvae, nitrates
Essington, T. E., Anderson, S. C., Barnett, L. A. K., Berger, H. M., Siedlecki, S. A., & Ward, E. J. (2022). Advancing statistical models to reveal the effect of dissolved oxygen on the spatial distribution of marine taxa using thresholds and a physiologically based index. Ecography (Copenhagen), 2022(8). https://doi.org/10.1111/ecog.06249 climate change, distribution shifts, metabolic index, spatial modeling
Rougemont, Q., Xuereb, A., Dallaire, X., Moore, J.-S., Normandeau, E., Perreault-Payette, A., Bougas, B., Rondeau, E. B., Withler, R. E., Van Doornik, D. M., Crane, P. A., Naish, K. A., Garza, J. C., Beacham, T. D., Koop, B. F., & Bernatchez, L. (2023). Long-distance migration is a major factor driving local adaptation at continental scale in Coho salmon. Molecular Ecology, 32, 542– 559. https://doi.org/10.1111/mec.16339 long-distance migration, local adaptation, continental scale, Coho salmon, Oncorhynchus kisutch
Deeg, C. M., Sutherland, B. J. G., Ming, T. J., Wallace, C., Jonsen, K., Flynn, K. L., Rondeau, E. B., Beacham, T. D., & Miller, K. (2022). In‐field genetic stock identification of overwintering coho salmon in the gulf of alaska: Evaluation of nanopore sequencing for remote real‐time deployment. Molecular Ecology Resources, 22(5), 1824-1835. https://doi.org/10.1111/1755-0998.13595 at-sea, genetic stock identification, mobile, Nanopore, salmon, single nucleotide polymorphism
Beacham, T. D., Jonsen, K., Sutherland, B. J. G., Ramshaw, B., & Rondeau, E. B. (2022). Parentage-based tagging and genetic stock identification applied to assessment of mixed-stock fisheries and hatchery broodstocks for chinook salmon in british columbia, canada. Fisheries Research, 253, 106369. https://doi.org/10.1016/j.fishres.2022.106369 Chinook salmon, fishery management, genetic stock identification, mixed-stock fishery, parentage-based tagging
He, X., Stanley, R. R. E., Rubidge, E. M., Jeffery, N. W., Hamilton, L. C., Westfall, K. M., Gilmore, S. R., Roux, L. D., Gale, K. S. P., Heaslip, S. G., Steeves, R., & Abbott, C. L. (2022). Fish community surveys in eelgrass beds using both eDNA metabarcoding and seining: Implications for biodiversity monitoring in the coastal zone. Canadian Journal of Fisheries and Aquatic Sciences, 79(8), 1335-1346. https://doi.org/10.1139/cjfas-2021-0215 Environmental DNA (eDNA), eDNA metabarcoding, biodiversity monitoring, coastal eelgrass (Zostera marina), Marine Protected Areas (MPAs)
Yamada, S. B., Gillespie, G. E., Thomson, R. E., & Norgard, T. C. (2021). Ocean indicators predict range expansion of an introduced species: Invasion history of the european green crab carcinus maenas on the north american pacific coast. Journal of Shellfish Research, 40(2), 399-413. https://doi.org/10.2983/035.040.0212 European Green Crab, Carcinus maenas, range expansion, Davidson Current, El Niño, Pacific decadal oscillation, invasive species
Becker, K., Thomson, R.E., Davis, E.E. et al. Geothermal heating and episodic cold-seawater intrusions into an isolated ridge-flank basin near the Mid-Atlantic Ridge. Commun Earth Environ 2, 226 (2021). https://doi.org/10.1038/s43247-021-00297-2 geothermal heating, episodic cold-seawater intrusions, mid-Atlantic Ridge, geothermal flux
Zaytsev, O., Rabinovich, A. B., & Thomson, R. E. (2021). The impact of the chiapas tsunami of 8 september 2017 on the coast of mexico. part 1: Observations, statistics, and energy partitioning. Pure and Applied Geophysics, 178(11), 4291-4323. https://doi.org/10.1007/s00024-021-02893-x 2017 Chiapas earthqake and tsunami, Mexico, Central America, tide gauges, DART, time series analysis, spectra, tsunami parameters, 2010 and 2011 tsunamis
K.L.E. Berry, S. Hess, T.D. Clark, A.S. Wenger, M.O. Hoogenboom, A.P. Negri. Effects of suspended coal particles on gill structure and oxygen consumption rates in a coral reef fish, Marine Pollution Bulletin, Volume 169,
2021, 112459, ISSN 0025-326X, https://doi.org/10.1016/j.marpolbul.2021.112459
gill remodeling, respirometry, pollution
Freshwater, C., Duguid, W., Juanes, F., & McKinnell, S. (2023). A century-long time series reveals large declines and greater synchrony in nass river sockeye salmon size-at-age. Canadian Journal of Fisheries and Aquatic Sciences, https://doi.org/10.1139/cjfas-2022-0259 body size, age, time series, sockeye salmon, fecundity
Proudfoot, B., Robb, C., & Canada. Department of Fisheries and Oceans. Pacific Region. (2022). Geomorphic units in the strait of georgia and southern shelf bioregions. Fisheries and Oceans Canada, Science Branch, Pacific Region, Pacific Biological Station. Pacific Marine Ecological Classification System, Benthic terrain, Marine Spatial Planning, Continental Shelf, Continental Slope
Covernton, G. A., Dietterle, M., Pearce, C. M., Gurney-Smith, H. J., Dower, J. F., & Dudas, S. E. (2022). Depuration of anthropogenic particles by pacific oysters (crassostrea gigas): Feasibility and efficacy. Marine Pollution Bulletin, 181, 113886-113886. https://doi.org/10.1016/j.marpolbul.2022.113886 Crassostrea gigas, depuration, microfibres, microplastics, Pacific oyster, seafood
Grenier, M., Brown, K. A., Colombo, M., Belhadj, M., Baconnais, I., Pham, V., Soon, M., Myers, P. G., Jeandel, C., & François, R. (2022). Controlling factors and impacts of river-borne neodymium isotope signatures and rare earth element concentrations supplied to the canadian arctic archipelago. Earth and Planetary Science Letters, 578, 117341. https://doi.org/10.1016/j.epsl.2021.117341 river geochemistry, Rare Earth Elements, neodymium isotopes, bedrock geology, dissolved riverine inputs, Canadian Arctic Archipelago
Tavares, S. B., Whitehead, H., & Doniol-Valcroze, T. (2022). Assessing social structure: A data-driven approach to define associations between individuals. Mammalian Biology : Zeitschrift Für Säugetierkunde, 102(3), 551-566. https://doi.org/10.1007/s42991-022-00231-9 social structure, individual association, photo-identification, killer whales, data-driven
Shartau, R. B., Snyman, H. N., Turcotte, L., McCarron, P., Bradshaw, J. C., & Johnson, S. C. (2022). Acute microcystin exposure induces reversible histopathological changes in chinook salmon (oncorhynchus tshawytscha) and atlantic salmon (salmo salar). Journal of Fish Diseases, 45(5), 729-742. https://doi.org/10.1111/jfd.13599 microcystins, toxicity, Atlantic Salmon and Chinook Salmon
Lavery, M. A. K., Rooper, C. N., Sawada, K., Fenske, K., Kulik, V., & Park, K. J. (2023;2022;). Effects of oceanography on north pacific armorhead recruitment in the emperor seamounts. Fisheries Oceanography, 32(2), 160-176. https://doi.org/10.1111/fog.12612 North Pacific armorhead, oceanography, climate effects, environmental covariates, recruitment, OceanParcels
Simpson, E., Ianson, D., & Kohfeld, K. E. (2022). Using end-member models to estimate seasonal carbonate chemistry and acidification sensitivity in temperate estuaries. Geophysical Research Letters, 49, e2021GL095579. ocean acidification, anthropogenic carbon, estuarine sensitivity
Bateman, A. W., Teffer, A. K., Bass, A., Ming, T., Kaukinen, K., Hunt, B. P. V., Krkošek, M., & Miller, K. M. (2022). Atlantic salmon farms are a likely source of tenacibaculum maritimum infection in migratory fraser river sockeye salmon. Canadian Journal of Fisheries and Aquatic Sciences, 79(8), 1225-1240. https://doi.org/10.1139/cjfas-2021-0164 epidemiological modes, migration, salmon farms, sockeye salmon, wildlife-livestock interface
Deeg, C. M., Kanzeparova, A. N., Somov, A. A., Esenkulova, S., Di Cicco, E., Kaukinen, K. H., Tabata, A., Ming, T. J., Li, S., Mordecai, G., Schulze, A., & Miller, K. M. (2022). Way out there: Pathogens, health, and condition of overwintering salmon in the gulf of alaska. Facets (Ottawa), 7, 247-285. https://doi.org/10.1139/facets-2021-0052 Pacific salmon, Winter, Gulf of Alaska, Pathogens, Stressors
Proudfoot, B., Robb, C., Rubidge, E., Murray, C. C., & Sweazey, B. (2022). Science workshop report: Spatial data contributions to federal initiatives in the pacific region. (). Science, Workshop, Marine Spatial Planning (MSP), Data, Initiative
Schaub, J., McLaskey, A. K., Forster, I., & Hunt, B. P. (2023). Size‐based changes in trophic ecology and nutritional quality of moon jellyfish (Aurelia labiata). Ecosphere, 14(3), e4430. moon jellyfish, Aurelia labiate, trophic ecology, nutritional quality
Savoca, M. S., Kühn, S., Sun, C., Avery-Gomm, S., Choy, C. A., Dudas, S., Hong, S. H., Hyrenbach, K. D., Li, T., Ng, C. K., Provencher, J. F., & Lynch, J. M. (2022). Towards a north pacific ocean long-term monitoring program for plastic pollution: A review and recommendations for plastic ingestion bioindicators. Environmental Pollution (1987), 310, 119861-119861. https://doi.org/10.1016/j.envpol.2022.119861 plastics, indicator, Pacific Ocean
Jackson, J. M., Johannessen, S., Del Bel Belluz, J., Hunt, B. P. V., & Hannah, C. G. (2022). Correction to: Identification of a seasonal subsurface oxygen minimum in rivers inlet, british columbia. Estuaries and Coasts, 45(3), 920-920. https://doi.org/10.1007/s12237-021-01011-3 British Columbia, Fjord, Subsurface oxygen minimum, Upwelling, Downwelling, Remineralization
Thomson, R. E., & Fine, I. (2021). Revisiting the ocean's nonisostatic response to 5-day atmospheric loading: New results based on global bottom pressure records and numerical modeling. Journal of Physical Oceanography, 51(9), 2845-2859. https://doi.org/10.1175/JPO-D-21-0025.1 Atmosphere-ocean interaction, Barotropic flows, Inertia-gravity waves, Kelvin waves, Ocean dynamics, Planetary waves, Pressure, Rossby waves, Abyssal circulation, Sea level, Ocean models
Devlin, R. H., Biagi, C. A., Sakhrani, D., Fujimoto, T., Leggatt, R. A., Smith, J. L., & Yesaki, T. Y. (2022). An assessment of hybridization potential between atlantic and pacific salmon. Canadian Journal of Fisheries and Aquatic Sciences, 79(4), 670-676. https://doi.org/10.1139/cjfas-2021-0083 hybridization, Atlantic salmon, Salmo salar, Pacific salmon, Oncorhynchus, hybrids, salmonids
Pon, L. B., Lidin, G. W., Selbie, D. T., & Canada. Department of Fisheries and Oceans. Pacific Region. (2022). Hydroacoustic enumerations and trawl surveys of juvenile sockeye salmon (oncorhynchus nerka) in quesnel lake, british columbia between 2010 and 2015. Cultus Lake Salmon Research Laboratory, Science Branch, Pacific Region, Fisheries and Oceans Canada. hydroacoustic enumerations, trawl surveys, juvenile Sockeye salmon, Oncorhynchus nerka, British Columbia, Quesnel Lake
Wade, J., & Canada. Department of Fisheries and Oceans. Pacific Region. Pacific Biological Station. (2022). Summary of 2011-2021 trap data for the endangered morrison creek lamprey (lampetra richardsoni). Science Branch, Pacific Region, Fisheries and Oceans Canada, Pacific Biological Station. Lamprey, Morrison Creek, Trapping, Lamptera richardsoni
Wilborn, R. E., Spies, I., Goddard, P., Rooper, C. N., & Orr, J. W. (2022). First observation of the use of coral habitat by larval northern rockfish (sebastes polyspinis) in the western gulf of alaska. Fishery Bulletin (Washington, D.C.), 120(1), 74-78. https://doi.org/10.7755/FB.120.1.7 habitat use, deep-sea corals, rockfish, larval stages, genetic species identification
Wright-LaGreca, M., Mackenzie, C., & Green, T. J. (2022). Ocean Acidification Alters Developmental Timing and Gene Expression of Ion Transport Proteins During Larval Development in Resilient and Susceptible Lineages of the Pacific Oyster (Crassostrea gigas). Marine Biotechnology, 1-9. Crassostrea, ocean acidification, larvae, transcriptomics, genetic selection
Brunt, M. W., Kreiberg, H., & von Keyserlingk, Marina A. G. (2022). Invertebrate research without ethical or regulatory oversight reduces public confidence and trust. Humanities & Social Sciences Communications, 9(1), 1-9. https://doi.org/10.1057/s41599-022-01272-8 social licence, research animals, ethical oversight, aquatic, terrestrial
Cuddington, K, Edwards, A.M., and Ingalls, B. (2022). Building Skills in Quantitative Biology. https://www.quantitative-biology.ca GitHub, R Markdown, Machine Learning, Optimisation, Multivariate Analysis
Iacarella, J. C., Burke, L., Clyde, G., Wicks, A., Clavelle, T., Dunham, A., Rubidge, E., & Woods, P. (2023). Application of AIS- and flyover-based methods to monitor illegal and legal fishing in canada's pacific marine conservation areas. Conservation Science and Practice, https://doi.org/10.1111/csp2.12926 aerial surveillance, Automatic Identification System (AIS), conservation area performance, fishing closures, Marine Protected Area (MPA), management effectiveness, non-compliance, vessel tracking
Li, Y., Ma, S., Fu, C., Li, J., Tian, Y., Sun, P., Ju, P., & Liu, S. (2022). Seasonal differences in the relationship between biodiversity and ecosystem functioning in an overexploited shelf sea ecosystem. Diversity & Distributions, 28(8), 1706-1720. https://doi.org/10.1111/ddi.13521 biodiversity and ecosystem functioning relationship, demersal fish community, environmental factors, overexploited shelf sea ecosystem, seasonal dynamics, taxonomic and functional diversity
Edwards, A.M., A.M. Berger, C.J. Grandin and K.F. Johnson. (2022). Status of the Pacifc Hake (whiting) stock in U.S. and Canadian waters in 2022. Joint Technical Committee of the U.S. and Canada Pacifc Hake/Whiting Agreement, National Marine Fisheries Service and Fisheries and Oceans Canada. 1 - 238.  https://media.fisheries.noaa.gov/2022-02/2022-hake-assessment-post-srg.pdf Pacific Hake, stock assessment
Boldt, J. L., Murphy, H. M., Chamberland, J., Debertin, A., Gauthier, S., Hackett, B., Hagel, P. S., Majewski, A. R., McDermid, J. L., Mérette, D., Robinson, C. L. K., Rooper, C. N., Sherbo, B., Van Beveren, E., & Walkusz, W. (2022). Canada's forage fish: An important but poorly understood component of marine ecosystems. Canadian Journal of Fisheries and Aquatic Sciences, 79(11), 1911-1933. https://doi.org/10.1139/cjfas-2022-0060 literature mapping, knowledge gaps, pressures, ecosystem role, distribution, forage fish
Shotwell, S. K., Pirtle, J. L., Watson, J. T., Deary, A. L., Doyle, M. J., Barbeaux, S. J., Dorn, M. W., Gibson, G. A., Goldstein, E. D., Hanselman, D. H., Hermann, A. J., Hulson, P. J. F., Laurel, B. J., Moss, J. H., Ormseth, O. A., Robinson, D., Rogers, L. A., Rooper, C. N., Spies, I., . . . Vollenweider, J. J. (2022). Synthesizing integrated ecosystem research to create informed stock-specific indicators for next generation stock assessments. Deep-Sea Research. Part II, Topical Studies in Oceanography, 198, 105070. https://doi.org/10.1016/j.dsr2.2022.105070 Ecosystem indicators, ecosystem based fisheries management, integrated ecosystem assessment, next generation stock assessment, recruitment, temperature thresholds
Guyondet, T., Filgueira, R., Pearce, C. M., Tremblay, R., & Comeau, L. A. (2022). Nutrient-loading mitigation by shellfish aquaculture in semi-enclosed estuaries. Frontiers in Marine Science, 9https://doi.org/10.3389/fmars.2022.909926 Eutrophication, Nutrient loading, Shellfish aquaculture, Ecosystem services, Estuary model, Climate change
Evans, R., Gauthier, S., & Robinson, C. L. K. (2022). Ecological considerations for species distribution modelling of euphausiids in the northeast pacific ocean. Canadian Journal of Fisheries and Aquatic Sciences, 79(3), 518-532. https://doi.org/10.1139/cjfas-2020-0481 CALIFORNIA CURRENT IMPLICATION, HAKE, MERLUCCIUS PRODUCTUS, SOUTH-WEST COAST, EL-NINO, POPULATION BIOLOGY, BRITISH-COLUMBIA, CENTRAL OREGON, INTERANNUAL VARIATIONS, ZOOPLANKTON COMMUNITY, CONSERVATION BIOLOGY
Bluhm, B. A., Brown, K., Rotermund, L., Williams, W., Danielsen, S., & Carmack, E. C. (2022). New distribution records of kelp in the kitikmeot region, northwest passage, canada, fill a pan-arctic gap. Polar Biology, 45(4), 719-736. https://doi.org/10.1007/s00300-022-03007-6 Arctic, Kelp, Alaria esculenta, Laminaria solidungula, Saccharina latissima, Northwest Passage, Habitat
McMillan, C. J., Keppel, E. A., Spaven, L. D., Doniol-Valcroze, T., & Canada. Department of Fisheries and Oceans. Pacific Region. Pacific Biological Station. (2022). Preliminary report on the seasonal abundance and distribution of cetaceans in the southern salish sea in response to TMX recommendations 5 and 6 (year 1). Fisheries and Oceans Canada, Science Branch, Pacific Region, Pacific Biological Station. Trans Mountain Expansion (TMX), Cetaceans, whales, abundance, distribution
Barnes, C. L., Essington, T. E., Pirtle, J. L., Rooper, C. N., Laman, E. A., Holsman, K. K., Aydin, K. Y., & Thorson, J. T. (2022). Climate‐informed models benefit hindcasting but present challenges when forecasting species–habitat associations. Ecography (Copenhagen), 2022(10), n/a. https://doi.org/10.1111/ecog.06189 climate change, forecast skill, generalized additive model, hindcast performance, retrospective skill testing, species distribution model
Shotwell, S. K., Pirtle, J. L., Watson, J. T., Deary, A. L., Doyle, M. J., Barbeaux, S. J., Dorn, M. W., Gibson, G. A., Goldstein, E. D., Hanselman, D. H., Hermann, A. J., Hulson, P. J. F., Laurel, B. J., Moss, J. H., Ormseth, O. A., Robinson, D., Rogers, L. A., Rooper, C. N., Spies, I., . . . Vollenweider, J. J. (2022). Synthesizing integrated ecosystem research to create informed stock-specific indicators for next generation stock assessments. Deep-Sea Research. Part II, Topical Studies in Oceanography, 198, 105070. https://doi.org/10.1016/j.dsr2.2022.105070 Ecosystem indicators, ecosystem based fisheries management, integrated ecosystem assessment, next generation stock assessment, recruitment, temperature thresholds
Garver, K. A., Hawley, L. M., Thiessen, L., Harborne, M., Berdan, C., Lofthouse, D., & Canada. Department of Fisheries and Oceans. Pacific Region. Pacific Biological Station. (2022). Report on the occurrence of infectious hematopoietic necrosis disease in out-migrating sockeye salmon fry at pinkut creek spawning channel in the spring of 2021. Fisheries and Oceans Canada, Pacific Biological Station. Infectious hematopoietic necrosis virus (IHNV), Sockeye Salmon, Spawning Channel, Babine Lake, Pinkut Creek, Fulton River
Wiese, F.K.; Nelson, R.J. Pathways between Climate, Fish, Fisheries, and Management: A Conceptual Integrated Ecosystem Management Approach. J. Mar. Sci. Eng. 2022, 10, 338. https://doi.org/10.3390/jmse10030338 ecosystem management, fisheries, climate change, adaptation, resilience, conceptual model, socio-ecological systems
Paull, C. K.; Dallimore, S. R.; Jin, Y. K.; Caress, D. W.; Lundsten, E.; Gwiazda, R.; Anderson, K.; Clarke, J. H.; Youngblut, S.; Melling, H., Rapid seafloor changes associated with the degradation of Arctic submarine permafrost. J. Proceedings of the National Academy of Sciences of the United States of America. 2022, 12, 119. https://doi.org/10.1073/pnas.2119105119 permafrost, Arctic, repeat mapping, pingos, thermokarst
Charlie, A., Proverbs, T. A., Hodgson, E. E., & Hovel, R. A. (2022). Shifting seasons and threats to harvest, culture, and Self‐Identity: A personal narrative on the consequences of changing climate. Geohealth, 6(12), e2022GH000617-n/a. https://doi.org/10.1029/2022GH000617 climate change, Indigenous calendars, personal narrative, Arctic
Mackenzie, C. L., Pearce, C. M., Leduc, S., Roth, D., Kellogg, C. T. E., Clemente-Carvalho, R. B. G., & Green, T. J. (2022). Impacts of seawater pH buffering on the larval microbiome and carry-over effects on later-life disease susceptibility in pacific oysters. Applied and Environmental Microbiology, 88(22), e0165422-e0165422. https://doi.org/10.1128/aem.01654-22 Carry-over effects, Crassostrea gigas, Ocean acidification buffering, Pacific oyster, Vibrio exposure
Boyd, L., Grant, P., Lemieux, J., Iacarella, J. C., & Canada. Department of Fisheries and Oceans. Pacific Region. (2022). Cumulative effects of threats on at-risk species habitat in the fraser valley, british columbia. Fisheries and Oceans Canada, Science Branch, Pacific Region, Cultus Lake Laboratory. cumulative effects, threats, species at risk, salmon, freshwater, habitat
Thompson, P. L., Nephin, J., Davies, S. C., Park, A. E., Lyons, D. A., Rooper, C. N., Angelica Peña, M., Christian, J. R., Hunter, K. L., Rubidge, E., & Holdsworth, A. M. (2023). Groundfish biodiversity change in northeastern pacific waters under projected warming and deoxygenation. Philosophical Transactions of the Royal Society of London. Series B. Biological Sciences, 378(1881), 20220191-20220191. https://doi.org/10.1098/rstb.2022.0191 climate change, groundfish, biodiversity, deoxygenation, warming, species distributions, hypoxia, depth
Burke, L., Clyde, G., Proudfoot, B., Rubidge, E. M., Iacarella, J. C., & Canada. Department of Fisheries and Oceans. Pacific Region. Institute of Ocean Sciences. (2022). Monitoring pacific marine conservation area effectiveness using aerial and RADARSAT-2 (synthetic aperture radar) vessel detection. Fisheries and Oceans Canada, Science Branch, Pacific Region, Institute of Ocean Sciences. aerial surveillance, RADARSAT-2, Automatic Identification Systems, conservation area performance, fishing closures, Marine Protected Area, management effectiveness, non-compliance, vessel tracking
Robinson, C. L. K., Bergman, L. C., Allison, M. J., Huard, J., Sutherst, J., & Helbing, C. C. (2022). Application of environmental DNA as a tool for detecting intertidal habitat use by forage fish. Ecological Indicators, 142, 109306. https://doi.org/10.1016/j.ecolind.2022.109306 Environmental DNA, forage fish, intertidal habitats
Jones, S. R. M., & Price, D. (2022). Elevated seawater temperature and infection with neoparamoeba perurans exacerbate complex gill disease in farmed atlantic salmon ( salmo salar ) in british columbia, canada. Microorganisms (Basel), 10(5), 1039. https://doi.org/10.3390/microorganisms10051039 salmon, aquaculture, gill disease, temperature
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Lüskow, F., Galbraith, M. D., Kwong, L. E., & Pakhomov, E. A. (2022). Biology and distribution of salps in the subarctic northeast pacific. Marine Biology, 169(6)https://doi.org/10.1007/s00227-022-04067-2 Pelagic tunicate, Thaliacea, Heatwave, Pacific Ocean, Morphometrics, Long-term record
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Polinski, M. P., Gross, L. A., Marty, G. D., & Garver, K. A. (2022). Heart inflammation and piscine orthoreovirus genotype-1 in pacific canada atlantic salmon net-pen farms: 2016-2019. BMC Veterinary Research, 18(1), 1-306. https://doi.org/10.1186/s12917-022-03409-y Piscine orthoreovirus, Atlantic salmon, aquaculture, seawater net-pens
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Jarníková, T., Ianson, D., Allen, S. E., Shao, A. E., & Olson, E. M. (2022). Anthropogenic carbon increase has caused critical shifts in aragonite saturation across a sensitive coastal system. Global Biogeochemical Cycles, 36, e2021GB007024, https://doi.org/10.1029/2021GB007024 coastal ocean acidification, carbon cycle, ocean acidification, sub-mesoscale ocean model, anthropogenic carbon, aragonite saturation
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Thompson, W. A., Lau, G. Y., Richards, J. G., & Devlin, R. H. (2023). Rationed and satiated growth hormone transgenic coho salmon (oncorhynchus kisutch) show tissue specific differences in energy stores. Comparative Biochemistry and Physiology b-Biochemistry & Molecular Biology, 263, 110781-110781. https://doi.org/10.1016/j.cbpb.2022.110781 energetics, nutrition, growth hormone, transgenic, coho salmon 
Rousseau, S., Gauthier, S., Neville, C., Johnson, S., & Trudel, M. (2022). Acoustic classification of juvenile pacific salmon (oncorhynchus spp) and pacific herring (clupea pallasii) schools using random forests. Frontiers in Marine Science, 9https://doi.org/10.3389/fmars.2022.857645 random forest, machine learning, acoustic classification, salmon, herring
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Pata, P. R., Galbraith, M., Young, K., Margolin, A. R., Perry, R. I., & Hunt, B. P. V. (2022). Persistent zooplankton bioregions reflect long-term consistency of community composition and oceanographic drivers in the NE pacific. Progress in Oceanography, 206, 102849. https://doi.org/10.1016/j.pocean.2022.102849 Zooplankton, Biogeography, Clustering, Community composition, British Columbia, Northeast (NE) Pacific
Han, G., Chamberlain, J., Webber, C., & Hannah, C. (2022). A new method of determining glass sponge reef adaptive management zones for the hecate strait and queen charlotte sound marine protected area. Journal of Marine Science and Engineering, 10(7), 971. https://doi.org/10.3390/jmse10070971 glass sponge reefs, adaptive management zone, sediment transport, currents, marine protected area
Murchy, K. A., Vagle, S., & Juanes, F. (2022). Anchored bulk carriers have substantial impacts on the underwater soundscape in cowichan bay, british columbia. Marine Pollution Bulletin, 182, 113921-113921. https://doi.org/10.1016/j.marpolbul.2022.113921 Soundscapes, Shipping noise, Acoustic additions
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Melling, H. (2022). Thickness of multi-year sea ice on the northern canadian polar shelf: A second look after 40 years. The Cryosphere, 16(8), 3181-3197. https://doi.org/10.5194/tc-16-3181-2022 ARCTIC ARCHIPELAGO, VARIABILITY, TOPOGRAPHY
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Ma, S., Fu, C., Li, J., Sun, P., Liu, Y., Ye, Z., Watanabe, Y., & Tian, Y. (2023). Non‐stationary effects of multiple drivers on the dynamics of japanese sardine (sardinops melanostictus, clupeidae). Fish and Fisheries (Oxford, England), 24(1), 40-55. https://doi.org/10.1111/faf.12708 Japanese sardine, non-stationary effects, density-dependence, climate, fishing, northwestern Pacific
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Frouin-Mouy, H., Mouy, X., Pilkington, J., Kusel, E., Nichol, L., Doniol-Valcroze, T., & Lee, L. (2022). Acoustic and visual cetacean surveys reveal year-round spatial and temporal distributions for multiple species in northern british columbia, canada. Scientific Reports, 12(1), 19272-19272. https://doi.org/10.1038/s41598-022-22069-4 Marine biology, animal migration, ecology
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Huang, T., Ma, J., Song, S., Ling, Z., Macdonald, R. W., Gao, H., Tao, S., Shen, H., Zhao, Y., Liu, X., Tian, C., Li, Y., Jia, H., Lian, L., & Mao, X. (2022). Health and environmental consequences of crop residue burning correlated with increasing crop yields midst india's green revolution. NPJ Climate and Atmospheric Science, 5(1), 1-9. https://doi.org/10.1038/s41612-022-00306-x POLYCYCLIC AROMATIC-HYDROCARBONS, LONG-RANGE TRANSPORT, CANADIAN PRAIRIES, GANGETIC PLAIN, LINDANE USAGE, ISOMER-RATIOS, GREAT-LAKES, AMBIENT AIREMISSIONS, BIOMASS
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Thompson, P. L., Rooper, C. N., Nephin, J., Park, A. E., Christian, J. R., Davies, S. C., Hunter, K., Lyons, D. A., Peña, M. A., Proudfoot, B., Rubidge, E. M., & Holdsworth, A. M. (2023). Response of pacific halibut (hippoglossus stenolepis) to future climate scenarios in the northeast pacific ocean. Fisheries Research, 258, 106540. https://doi.org/10.1016/j.fishres.2022.106540 Climate change, Species distribution, Pacific Halibut, Spatio temporal model, Oxygen limitation
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Barnett, L. A., Ward, E. J., & Anderson, S. C. (2021). Improving estimates of species distribution change by incorporating local trends. Ecography, 44(3), 427-439. Species distribution modeling, spatial modelling, survey index standardization
Brodie, S., Smith, J. A., Muhling, B. A., Barnett, L. A. K., Carroll, G., Fiedler, P., Bograd, S. J., Hazen, E. L., Jacox, M. G., Andrews, K. S., Barnes, C. L., Crozier, L. G., Fiechter, J., Fredston, A., Haltuch, M. A., Harvey, C. J., Holmes, E., Karp, M. A., Liu, O. R., … Kaplan, I. C. (2022). Recommendations for quantifying and reducing uncertainty in climate projections of species distributions. Global Change Biology, 28, 6586– 6601. https://doi.org/10.1111/gcb.16371 artificial intelligence, climate change, Earth System Models, extrapolation, fisheries, machine
Wilson, S. M., Patterson, D. A., & Moore, J. W. (2022). Intra- and inter-population variation in sensitivity of migratory sockeye salmon smolts to phenological mismatch. Marine Ecology. Progress Series (Halstenbek), 692, 119-136. https://doi.org/10.3354/meps14070 match-mismatch hypothesis, sensitivity, migration, phenology, salmon, trait variation
Doherty, B., Cox, S. P., Rooper, C. N., Johnson, S. D. N., & Kronlund, A. R. (2021). Species distribution models for deep-water coral habitats that account for spatial uncertainty in trap-camera fishery data. Marine Ecology. Progress Series (Halstenbek), 660, 69-93. https://doi.org/10.3354/meps13564 Sensitive benthic habitats, bottom-contract fishing, quantitative risk assessment, presence/absence data, vulnerable marine ecosystems, seamount
Stienessen, S. C., Rooper, C. N., Webe, T. C., Jones, D. T., Pirtle, J. L., & Wilson, C. D. (2021). Comparison of model types for prediction of seafloor trawlability in the gulf of alaska by using multibeam sonar data. Fishery Bulletin (Washington, D.C.), 119(2-3), 184-196. https://doi.org/10.7755/FB.119.2-3.7 seafloor trawlability, Gulf of Alaska, multibeam sonar, trawlable, untrawlable, rockfish, Sebastes 
Rooper, C. N., Ortiz, I., Hermann, A. J., Laman, N., Cheng, W., Kearney, K., & Aydin, K. (2021). Predicted shifts of groundfish distribution in the eastern bering sea under climate change, with implications for fish populations and fisheries management. ICES Journal of Marine Science, 78(1), 220-234. https://doi.org/10.1093/icesjms/fsaa215 Alaska, climate change, demersal fish, fish habitat, generalized additive modeling, regional ocean model systems, species distrbituion modeling, trawl surveys
Robichaud, D., Haggarty, D. R., & Canada. Department of Fisheries and Oceans. Pacific Region. (2022). Comparison of rockfish and lingcod catch estimates from internet recreational effort and catch (iREC) and creel surveys. Fisheries and Oceans Canada, Pacific Biological Station. Recreational catch monitoring, rockfish, Lingcod
Hodgdon, C. T., Khalsa, N. S., Mazur, M. D., & Chen, Y. (2022). Climate-driven changes in growth and size at maturity of gulf of maine lobster stocks: Implications for stock assessment models. Fishery Bulletin (Washington, D.C.), 120(3-4), 240-251. https://doi.org/10.7755/FB.120.3-4.5 lobster, stock assessment, climate change
Khalsa, N. S., Hodgdon, C. T., Mazur, M. D., & Chen, Y. (2023). Climate-driven shifts in growth and maturity induce changes to the population and fishery dynamics of a high-value crustacean. Fisheries Research, 259, 106574. https://doi.org/10.1016/j.fishres.2022.106574 lobster, growth, maturity, climate change
Mazur, M. D., Jesse, J., Cadrin, S. X., Truesdell, S. B., & Kerr, L. (2023). Consequences of ignoring climate impacts on new england groundfish stock assessment and management. Fisheries Research, 262, 106652. https://doi.org/10.1016/j.fishres.2023.106652 Climate change, stock assessment, management strategy evaluation, harvest control rules, groudfish
Friedland, K. D., Smoliński, S., & Tanaka, K. R. (2021). Contrasting patterns in the occurrence and biomass centers of gravity among fish and macroinvertebrates in a continental shelf ecosystem. Ecology and Evolution, 11(5), 2050-2063. https://doi.org/10.1002/ece3.7150 center of gravity, Northeast US Large Marine Ecosystem, random forest, temperature
Cornthwaite, A. M., King, J. R., Bresch, M. J., Granum, L. J., & Canada. Department of Fisheries and Oceans. Pacific Region. Pacific Biological Station. (2022). Pacific spiny dogfish (squalus suckleyi) longline survey in the strait of georgia, october 2-13, 2014. Fisheries and Oceans Canada, Science Branch, Pacific Region, Pacific Biological Station. Pacific Spiny Dogfish, Strait of Georgia, Stock Assessment, Index, Catch Rate
Planas, J. V., Rooper, C. N., & Kruse, G. H. (2023). Integrating biological research, fisheries science and management of pacific halibut (hippoglossus stenolepis) across the north pacific ocean. Fisheries Research, 259, 106559. https://doi.org/10.1016/j.fishres.2022.106559 Pacific halibut, management, research, special issue
Herder, E. C., Bureau, D., Bigg, M. I., & Canada. Department of Fisheries and Oceans. Pacific Region. (2022). Surveys for olympia oysters (ostrea lurida carpenter, 1864) at six index sites in british columbia — 2010 to 2021. Fisheries and Oceans Canada, Science Branch, Pacific Region, Pacific Biological Station. Olympia oysters, Ostrea lurida, British Columbia, species-at-risk, population density
Ward, E. J., Barnett, L. A. K., Anderson, S. C., Commander, C. J. C., & Essington, T. E. (2022). Incorporating non-stationary spatial variability into dynamic species distribution models. ICES Journal of Marine Science, 79(9), 2422-2429. https://doi.org/10.1093/icesjms/fsac179 extremes, groundfish, non-stationarity, spatially explicit models, variability
Lindmark, M., Anderson, S. C., Gogina, M., & Casini, M. (2022). Evaluating drivers of spatiotemporal individual condition of a bottom-associated marine fish. (). Cold Spring Harbor: Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/2022.04.19.488709 Le Cren's condition factor, spatial analysis, spatio-temporal model, density dependence, deoxygeneration, species distribution models
Gemmell, O.M. (2022) Presence-only species distribution modelling practices produce biased predictions for Alcyonacean corals on British Columbia's continental shelf and slope. [Master of Resource Management Thesis, Simon Fraser University] Simon Fraser University.  Presence-only, bias, species distribution models, sensitive benthic habitats
Poitevin, P., Lazure, P., Roy, V., Donnet, S., & Chauvaud, L. (2022). The 18.6-year lunar nodal cycle may affect ecosystems on the northwest atlantic continental shelves. Journal of Marine Systems, 235, 103783. https://doi.org/10.1016/j.jmarsys.2022.103783 Arctica islandica, Tides, Northwestern Atlantic continental shelf, Sclerochronology, Growth
Garzke, J., Forster, I., Godwin, S. C., Johnson, B. T., Krkosek, M., Mahara, N., Pakhomov, E. A., Rogers, L. A., & Hunt, B. P. (2022). Dynamic coastal pelagic habitat drives rapid changes in growth and condition of juvenile sockeye salmon (oncorhynchus nerka) during early marine migration. Facets (Ottawa), 7, 1328-1347. https://doi.org/10.1139/facets-2022-0068 fatty acids, RNA/DNA, zooplankton biomass, environmental variation, compensatory growth, zooplankton species composition
Iacarella JC, Burke L, Clyde G, et al. Monitoring temporal and spatial trends of illegal and legal fishing in marine conservation areas across Canada's three oceans. Conservation science and practice. 2023;5:n/a. Automatic Identification System (AIS), conservation area performance, fishing closures, fishing displacement, management effictiveness, Marine Protected Area (MPA), non-compliance, vessel tracking
Boldt, J. L., Murphy, H. M., Chamberland, J., Debertin, A., Gauthier, S., Hackett, B., Hagel, P. S., Majewski, A. R., McDermid, J. L., Mérette, D., Robinson, C. L. K., Rooper, C. N., Sherbo, B., Van Beveren, E., & Walkusz, W. (2022). Canada's forage fish: An important but poorly understood component of marine ecosystems. Canadian Journal of Fisheries and Aquatic Sciences, 79(11), 1911-1933. https://doi.org/10.1139/cjfas-2022-0060 environmental monitoring, ports, cumultiave effects, 
Brown, N. E. M., & Therriault, T. W. (2022). The hidden risk of keystone invaders in canada: A case study using nonindigenous crayfish. Canadian Journal of Fisheries and Aquatic Sciences, 79(9), 1479-1496. https://doi.org/10.1139/cjfas-2021-0245 Alien Invasive Species (AIS), crayfish, risk assessment
Orobko, M., Curren, G., Therriault, T. W., Lawton, P., Fanning, L., & Côté, I. M. (2022). Perception and consideration of cumulative effects and multiple stressors by marine managers in canada. Marine Policy, 143, 105122. https://doi.org/10.1016/j.marpol.2022.105122 cumulative effects, multiple stressors, ocean mangement, marine conservation, survey
Curren, G., Fanning, L., Lawton, P., Orobko, M., Côté, I. M., & Therriault, T. W. (2022). Challenges to incorporating social and economic factors into cumulative effects assessments in Canada’s marine conservation areas. Ecology and Society, 27(2), 35. https://doi.org/10.5751/ES-13342-270235 ocean management, survey, cumulative effects, marine conservation
Hollarsmith, J. A., Andrews, K., Naar, N., Starko, S., Calloway, M., Obaza, A., Buckner, E., Tonnes, D., Selleck, J., & Therriault, T. W. (2022). Toward a conceptual framework for managing and conserving marine habitats: A case study of kelp forests in the salish sea. Ecology and Evolution, 12(1), e8510-n/a. https://doi.org/10.1002/ece3.8510 marine conservation, kelp, decision support, framework
Westfall, K. M., Therriault, T. W., & Abbott, C. L. (2022). Targeted next‐generation sequencing of environmental DNA improves detection of invasive european green crab (carcinus maenas). Environmental DNA (Hoboken, N.J.), 4(2), 440-452. https://doi.org/10.1002/edn3.261 eDNA, European Green Crab, Automatic Identification System (AIS)
Ferrario, F., Araujo, C. A. S., Belanger, S., Bourgault, D., Carriere, J., Carrier-Belleau, C., Dreujou, E., Johnson, L. E., Juniper, S. K., Mabit, R., McKindsey, C. W., Ogston, L., Picard, M. M. M., Saint-Louis, R., Saulnier-Talbot, E., Shaw, J., Templeman, N., Therriault, T. W., Tremblay, J., & Archambault, P. (2022). Holistic environmental monitoring in ports as an opportunity to advance sustainable development, marine science, and social inclusiveness. Elementa (Washington, D.C.), 10(1)https://doi.org/10.1525/elementa.2021.00061 environmental monitoring, ports, cumultiave effects 
Sutherland, T. F., Amos, C. L., & Grant, J. (2022). The resuspension and deposition of biomediated sediments in upper south cove, nova scotia, canada. Journal of Coastal Research, 38(1), 19-34. https://doi.org/10.2112/JCOASTRES-D-20-00104.1 Sediment resuspension, deposition, biofilm, flume, flux
Sutherland, T. F., Guyondet, T., Filgueira, R., Krassovski, M. V., Foreman, M. G. G., Canada. Department of Fisheries and Oceans. Pacific Region, & Canadian Science Advisory Secretariat. (2022). Monitoring methods to support area-based bivalve aquaculture management in the pacific region. Fisheries and Oceans Canada, Canadian Science Advisory Secretariat. Ecosystem, monitor, methods, benthos, oceanography, aquaculture area-based
Guyondet, T., Krassovski, M. V., Sutherland, T. F., Foreman, M. G. G., Filgueira, R., Canada. Department of Fisheries and Oceans. Pacific Region, & Canadian Science Advisory Secretariat. (2022). An ecological carrying capacity assessment for shellfish aquaculture in baynes sound, british columbia. Fisheries and Oceans Canada, Canadian Science Advisory Secretariat. Shellfish, aquaculture, management, ecological, carrying capacity, phytoplankon, impact
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