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2023 DFO Pacific Science Publications

We are pleased to continue to provide Canadians with the Pacific Region's science publications, and to continue the ongoing communication of high quality research with this list of 2023 Pacific Science Publications. Below you will find primary and secondary peer reviewed publications published in 2023 which involve at least one DFO Science Branch author from the Pacific Region. The links provided to this research are hosted by third party publishers, as such journals may only be available in English.

Title Keywords
Warren, E. M., Curtis, L. J. F., Cross, S. F., Zaklan Duff, S. D., & Pearce, C. M. (2023). Formulated feeds prolong the reproductive period of a cultured echinoid. North American Journal of Aquaculture, 85, 355–1.https://doi.org/10.1002/naaq.10294 Brood stock development, Formulated feed, reproduction, Spawning, Sea urchin, Echinoid
Bass, A.L., Bateman, A.W., Kaukinen, K.H., Li, S., Ming, T., Patterson, D.A., Hinch, S.G. and Miller, K.M., (2023). The spatial distribution of infectious agents in wild Pacific salmon along the British Columbia coast. Scientific Reports, 13(1), p.5473. https://doi.org/10.1038/s41598-023-32583-8 Pacific salmon, Pathogen, Spatial models, Species distribution, Molecular ecology
Thompson, P.L., Anderson, S.C., Nephin, J., Haggarty, D.R., et al (2022) Disentangling the impacts of environmental change and commercial fishing on demersal fish biodiversity in a northeast Pacific ecosystem. Mar Ecol Prog Ser689:137-154.https://doi.org/10.3354/meps14034 Biodiversity change, Environmental change, Groundfish, Ecosystem-based management , Marine spatial planning, Temperature, Fishing, Species richness, Community biomass
Rondeau, E.B., Christensen, K.A., Sakhrani, D., Biagi, C.A., Wetklo, M., Johnson, H.A., Despins, C.A., Leggatt, R.A., Minkley, D.R., Withler, R.E. and Beacham, T.D., (2021). Genome assembly, transcriptome and SNP database for chum salmon (Oncorhynchus keta). bioRxiv, pp.2021-12. https://doi.org/10.1101/2021.12.27.474290 Reference Genome Assesmbly, Chum Salmon, Whole-genome Resequencing
Cameron Freshwater, Charles K. Parken, Strahan Tucker, Antonio Velez-Espino, and Jackie King. (2022). Nonstationary patterns in demographic traits covary with Chinook salmon marine distributions. Canadian Journal of Fisheries and Aquatic Sciences. 79(11): 1860-1878. https://doi.org/10.1139/cjfas-2021-0312 age-at-maturity, survival, Chinook salmon, population productivity
Katie S.P. Gale, Robyn E. Forrest, Christopher N. Rooper, Jessica Nephin, Scott Wallace, John Driscoll, and Emily Rubidge. (2022). Evaluation of collaboratively developed management measures to reduce coral and sponge bycatch in a fully monitored multispecies trawl fishery. Canadian Journal of Fisheries and Aquatic Sciences. 79(9): 1420-1434 https://doi.org/10.1139/cjfas-2021-0274 vulnerable marine ecosystem, environmental impacts, spatial management,  continental shelf
McLaskey, A.K., Forster, I., Belluz, J.D.B. and Hunt, B.P., (2022). A high-resolution time series of particulate matter fatty acids reveals temporal dynamics of the composition and quality available to zooplankton in a temperate coastal ocean. Progress in Oceanography, 206, p.102843 https://doi.org/10.1016/j.pocean.2022.102843 Food quality, Nutrition, Stable isotopes, Phytoplankton, Trophic markers, Pelagic food web, Canada, British Columbia, Strait of Georgia
Brian O. Ma, Lars Uunila, Cedar Morton, Frank Poulsen, Carl J. Schwarz, Clint A.D Alexander, Shaun Reimer & Kim Hyatt (2023) Updating inflow forecasts using empirical statistical matching for real-time prediction of daily net inflows to Okanagan Lake, Canadian Water Resources Journal / Revue canadienne des ressources hydriques. https://doi.org/10.1080/07011784.2023.2209547 multi-objective trade-off assessment, environmental flow, inflow prediction, endangered species, decision support system
Wade, J., Grant, P. (2022). Applying a Health Lens in Managing Species at Risk Under Threat of Alien Invasive Species. In: Stephen, C. (eds) Wildlife Population Health. Springer, Cham.https://doi.org/10.1007/978-3-030-90510-1_18 Invasive species, Species at risk
Yamada, S.B., Gillespie, G.E., Thomson, R.E. and Norgard, T.C., (2021). Ocean indicators predict range expansion of an introduced species: invasion history of the European green crab Carcinus maenas on the North American Pacific coast. Journal of Shellfish Research, 40(2), pp.399-413. https://doi.org/10.2983/035.040.0212 European green crab, Carcinus maenas, range expansion, Davidson Current, El Niño, Pacific species
Becker, K., Thomson, R.E., Davis, E.E., Villinger, H. and Wheat, C.G., (2021). Geothermal heating and episodic cold-seawater intrusions into an isolated ridge-flank basin near the Mid-Atlantic Ridge. Communications Earth & Environment,2(1), p.226. https://doi.org/10.1038/s43247-021-00297-2. deep sea drilling project (dsdp) hole-395a, western flank, bottom water, flow, circulation, Environmental Sciences & Ecology, Geology, Meteorology & Atmospheric, Sciences
Zaytsev, O., Rabinovich, A.B. and Thomson, R.E., (2021). The impact of the Chiapas Tsunami of 8 September 2017 on the coast of Mexico. Part 1: observations, statistics, and energy partitioning. Pure and Applied Geophysics, 178, pp.4291-4323. https://doi.org/10.1007/s00024-021-02893-x Earth Sciences-Geophysics, 2017 Chiapas earthquake and tsunami, Mexico, Central America, fields, Wave propagation, Waveguides, Physiographic features, Statistical methods
Berry, K.L.E., Hess, S., Clark, T.D., Wenger, A.S., Hoogenboom, M.O. and Negri, A.P., (2021). Effects of suspended coal particles on gill structure and oxygen consumption rates in a coral reef fish. Marine Pollution Bulletin, 169, p.112459. https://doi.org/10.1016/j.marpolbul.2021.112459 Gill remodeling, Respirometry, Pollution
Cowan, M.W., Pearce, C.M., Finston, T., Meyer, G.R., Marshall, R., Evans, W., Sutherland, T.F. and De La Bastide, P.Y., (2023). Role of the Vibrio community, reproductive effort, and environmental parameters in intertidal Pacific oyster summer mortality in British Columbia, Canada. Aquaculture, 565, p.739094. https://doi.org/10.1016/j.aquaculture.2022.739094. Crassostrea gigas, Gametogenesis, Pacific oyster, Summer Mortality, Vibrio aestuarianus
Raap, M.R., Gurney-Smith, H.J., Dudas, S.E., Pearce, C.M., Leong, J.S., Sutherland, B.J. and Koop, B.F., (2022). Effects of ancient anthropogenic clam gardens on the growth, survival, and transcriptome of Pacific littleneck clams (Leukoma staminea). bioRxiv, pp.2022-09. https://doi.org/10.1101/2022.09.09.507365 Clam gardens, Leukoma staminea, Pacific littleneck clam, Sediment carbonate content, Transcriptomics
Davies, S.C., Thompson, P.L., Gomez, C., Nephin, J., Knudby, A., Park, A.E., Friesen, S.K., under climate change. Ecography, 2023(11), p.e06731. https://doi.org/10.1111/ecog.06731 ecosystem management, environmental change, fisheries management, future climate, habitat suitability
He, X., Jeffery, N.W., Stanley, R.R.E., Hamilton, L.C., Rubidge, E.M. and Abbott, C.L., (2023). eDNA metabarcoding enriches traditional trawl survey data for monitoring biodiversity in the marine environment. ICES Journal of Marine Science, 80(5), pp.1529-1538. https://doi.org/10.1093/icesjms/fsad083 Atlantic Ocean, bottom trawl, fish, invertebrates, marine mammals, Marine Protected Area
Robyn E. Forrest, Allen R. Kronlund, Jaclyn S. Cleary, and Matthew H. Grinnell. (2023). An evidence-based approach for selecting a limit reference point for Pacific herring (Clupea pallasii) stocks in British Columbia, Canada. Canadian Journal of Fisheries and Aquatic Sciences80(7): 1071-1083. https://doi.org/10.1139/cjfas-2022-0168 Pacific herring, limit reference point, surplus production, serious harm
Harper, S.J., Burt, J.M., Nelson, L.K., Runnebaum, J.M., Cullen, A., Levin, P.S., Hunter, K.L., McIsaac, J. and Ban, N.C., (2023). Commercial fisher perceptions illuminate a need for social justice considerations in navigating climate change impacts on fisheries systems. Ecology and Society, 28(2). https://ecologyandsociety.org/vol28/iss2/art21/ Fisheries, climate, adaptation
Sutherland, T.F., Taylor, F.J.R., and Pond, S. (2023). Resting Stage Occurrence and Auxospore Formation of Diatoms Collected from Fjordic Sediments in Sechelt Inlet, British Columbia, Canada. Can. Tech. Rep. Fish. Aquat. Scii. 3521: vi + 21 p https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41096551.pdf Sechelt Inlet, Fjord, Diatom, Resting stage, Auxospore
Cowan, M.W., Pearce, C.M., Green, T.J., Finston, T., Meyer, G.R., McAmmond, B., Van Hamme, J.D., Bottos, E.M., Marshall, R., Evans, W. and Sutherland, T.F., (2024). Abundance of Vibrio aestuarianus, water temperature, and stocking density are associated with summer mortality of Pacific oysters in suspended culture. Aquaculture International, pp.1-22. https://doi.org/10.1007/s10499-024-01415-5 mortality events, shellfish aquaculture, microbiome, bacterial pathogens, marine heatwaves
Rabinovich, A.B., Šepić, J. and Thomson, R.E., (2023). Strength in Numbers: The Tail End of Typhoon Songda Combines with Local Cyclones to Generate Extreme Sea Level Oscillations on the British Columbia and Washington Coasts during Mid-October 2016. Journal of physical oceanography, 53(1), pp.131-155. https://doi.org/10.1175/JPO-D-22-0096.1 Extratropical cyclones, Sea level, Storm surges, Tropical cyclones, Ocean models
Sun, R., Sun, P., Fu, C., Liu, G., Liang, Z., Shin, Y.J., Barrier, N. and Tian, Y., (2023). Exploring balanced harvest as a potential strategy for highly exploited multispecies fisheries. ICES Journal of Marine Science, 80(4), pp.897-910. https://doi.org/10.1093/icesjms/fsad023 Balanced harvest, Ecosystem approach to fisheries, ecosystem model, multispecies fisheries, Marine Ecosystems (OSMOSE)
Ulaski, M.E., Warkentin, L., Naman, S.M. and Moore, J.W., (2023). Spatially variable effects of streamflow on water temperature and thermal sensitivity within a salmon‐bearing watershed in interior British Columbia, Canada. River Research and Applications, 39(10), pp.2036-2047 https://doi.org/10.1002/rra.4200 Climate sensitivity, flows, salmon
Darnis, G., Geoffroy, M., Dezutter, T., Aubry, C., Massicotte, P., Brown, T., Babin, M., Cote, D. and Fortier, L., (2022). Zooplankton assemblages along the North American Arctic: Ecological connectivity shaped by ocean circulation and bathymetry from the Chukchi Sea to Labrador Sea Sea. Elem Sci Anth, 10(1), p.00053. https://doi.org/10.1525/elementa.2022.00053 Mesozooplankton, Ecological connectivity, Biodiversity, North American Arctic, Arctic marine ecosystem
Bradford, M.J., Korman, J. and Sneep, J., (2023). Adaptive Management of Flows in a Regulated River: Flow-ecology Relationships Revealed by a 26-year, Five-treatment Flow Experiment. Environmental Management, 71(2), pp.439-450. https://doi.org/10.1007/s00267-022-01750-4 Adaptive management, Regulated river, Environmental flow, Juvenile salmonids, Flow-ecology relationships
Neville, C., Banks, M., Bouillon, D., Esenkulova, S., LaForge, R., Lewis, B., Martynuik, G., Schubert, A., Riddell, B., and Beamish, R. 2023. Expedition to study the winter ecology of Pacific salmon in Gulf of Alaska using gillnet and longline gear fished from FV Raw Spirit, February 25 – March 25, 2022. Can. Tech. Rep. Fish. Aquat. Sci. 3524: vi + 62 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41111503.pdf Gulf of Alaska, Pacific Salmon, Winter Ecology
Stredulinsky, E.H., Toews, S., Watson, J., Noren, D.P., Holt, M.M. and Thornton, S.J., (2023). Delineating important killer whale foraging areas using a spatiotemporal logistic model. Global Ecology and Conservation, 48, p.e02726. https://doi.org/10.1016/j.gecco.2023.e02726 spatial analysis, temporal autocorrelation, integrated nested Laplace approximation (INLA) , management, behaviour, focal follow, killer whale, Orcinus orca
Nanglu, K., de Carle, D., Cullen, T.M., Anderson, E.B., Arif, S., Castañeda, R.A., Chang, L.M., Iwama, R.E., Fellin, E., Manglicmot, R.C. and Massey, M.D., (2023). The nature of science: The fundamental role of natural history in ecology, evolution, conservation, and education. Ecology and Evolution, 13(10), p.e10621. https://doi.org/10.1002/ece3.10621 Natural History, Museums, Science Education, Ecology, Evolution, Earth Sciences, Conservation Biology, Policy
Schaub, J., McLaskey, A.K., Forster, I. and Hunt, B.P., (2023). Size‐based changes in trophic ecology and nutritional quality of moon jellyfish (Aurelia labiata). Ecosphere, 14(3), p.e4430. https://doi.org/10.1002/ecs2.4430 Bayesian mixing model, fatty acid, jellyfish, marine food web, nutrition, stable isotope
Stein, E.D., Jerde, C.L., Allan, E.A., Sepulveda, A.J., Abbott, C.L., Baerwald, M.R., Darling, J., Goodwin, K.D., Meyer, R.S., Timmers, M.A. and Thielen, P.M., (2024). Critical considerations for communicating environmental DNA science. Environmental DNA, 6(1), p.e472. https://doi.org/10.1002/edn3.472 Decision support, monitoring, commentary
Žárský, V., Karnkowska, A., Boscaro, V., Trznadel, M., Whelan, T.A., Hiltunen-Thorén, M., Onut-Brännström, I., Abbott, C.L., Fast, N.M., Burki, F. and Keeling, P.J., (2023). Contrasting outcomes of genome reduction in mikrocytids and microsporidians BMC biology, 21(1), p.137. https://doi.org/10.1186/s12915-023-01635-w Reductive eveolution, genomics, parasite metabolism
Lacko, L.C., Acheson, S.M. and Holt, K.R. (2023). Summary of the annual 2021 Sablefish (Anoplopoma fimbria) trap survey, October 6 - November 21, 2021. Can. Tech. Rep. Fish. Aquat. Sci. 3530: vii + 48 p Sablefish trap survey, Sablefish catch per unit effort (CPUE), Sablefish biology
Krassovski, M.V., Foreman, M.G., Guyondet, T., Filgueira, R. and Sutherland, T.F., (2024). A Circulation Model for Baynes Sound, British Columbia, Canada. Atmosphere-Ocean, 62(1), pp.90-118. https://doi.org/10.1080/07055900.2023.2287454 Baynes Sound, Finite Volume Community Ocean Model (FVCOM), circulation model, water renewal
Wright, B.M., Stredulinsky, E.H. and Ford, J.K., (2023). Sex in killer whales: behavior, exogamy, and the evolution of sexual strategies in the ocean’s apex predator. Sex in cetaceans, p.353. https://library.oapen.org/bitstream/handle/20.500.12657/76727/1/978-3-031-35651-3.pdf#page=352 (20.8MB, PDF) exogamy, female mate choice, intrasexual aggression, killer whale, male-male socio-sexual play, matrilineal, polygynandry, sexual dimorphism, sperm competition
Montgomery, E.M., Suhrbier, A.D. and Pearce, C.M., (2024). Biology, ecology, aquaculture, and commercial products of Apostichopus californicus. In The world of sea cucumbers (pp. 653-675). Academic Press. https://doi.org/10.1016/B978-0-323-95377-1.00042-4 California sea cucumber, Apostichopus californicus, biology, ecology, aquaculture, commercial products
Cicco, E.D., Zinn, K.R., Johnston, S.D., Kaukinen, K.H., Li, S., Archambault, J.F., Mantha-Rensi, K.N., Zielke, K.A., Bugg, W.S., Mordecai, G.J., Bass, A.L., Deeg, C.M., Bateman, A.W., Hing, S.G., Miller, K.M., (2023). Tenacibaculosis in wild-caught, captive Chinook salmon (Oncorhynchus tshawytscha) in British Columbia, Canada. bioRxiv, pp.2023-02.s, Christoph M. Deeg, Andrew W. Bateman, Scott G. Hinch, Kristina M. Miller., (2023). Tenacibaculosis in wild-caught, captive Chinook salmon (Oncorhynchus tshawytscha) in British Columbia, Canada. bioRxiv, pp.2023-02. https://doi.org/10.1101/2023.02.17.529034 Disease, Chinook, Tenacibaculosis, West Coast, Wild Salmon
Nemati, F., L. Leonard, G. Lintern, C. Brillon, A. Schaeffer, and R. Thomson., (2023). Detection of landslides and tsunamis in Douglas Channel and Gardner Canal, British Columbia. In Frontiers in Ocean Observing: Emerging Technologies for Understanding and Managing a Changing Ocean. E.S. Kappel, V. Cullen, M.J. Costello, L. Galgani, C. Gordó-Vilaseca, A. Govindarajan, S. Kouhi, C. Lavin, L. McCartin, J.D. Müller, B. Pirenne, T. Tanhua, Q. Zhao, and S. Zhao, eds, Oceanography 36(Supplement 1):76–77 https://doi.org/10.5670/oceanog.2023.s1.25. Earth Sciences-Oceanography, Landslides, Warning systems, Wave runup, Tsunamis, Mitigation, Barges, Early warning systems, Extreme waves, Inlets (waterways), Ocean floor, Detection, Inlets, Underwater
Pramlall, S., Jackson, J.M., Konik, M. and Costa, M., (2023). Merged multi-sensor ocean colour chlorophyll product evaluation for the British Columbia coast. Remote Sensing, 15(3), p.687. https://doi.org/10.3390/rs15030687 GlobColour, Ocean Colour Climate Change Initiative (OC-CCI), chlorophyll-a, match-up, merged products
Neville, C.M., Fitzpatrick, L.C., and Beamish, R.J. (2023). The diet of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Strait of Georgia, 2000-2017. Can. Tech. Rep. Fish. Aquat. Sci. 3525: vii + 22 p. Chinook Salmon, diet analysis, time series, strait of georgia, ecology, juvenile salmon
Warren, E.M., Curtis, L.J., Cross, S.F., Zaklan Duff, S.D. and Pearce, C.M., (2023). Formulated feeds prolong the reproductive period of a cultured echinoid. North American Journal of Aquaculture, 85(4), pp.355-363. https://doi.org/10.1002/naaq.10294 echinoid. formulated feed, reproduction, sea urchin, spawning
Deeg, C.M., Li, S., Esenkulova, S., Hunt, B.P., Schulze, A.D. and Miller, K.M., (2023). Environmental DNA survey of the Winter Salmonosphere in the Gulf of Alaska. Environmental DNA, 5(3), pp.519-539. https://doi.org/10.1002/edn3.404 Environmental DNA, Pacific Salmon, Winter, Gulf of Alaska, Pathogens, Stressors
Lin, Y. and Bianucci, L., (2024). Seasonal Variability of the Ocean Circulation in Queen Charlotte Strait, British Columbia.  Atmosphere-Ocean, 62(1), pp.35-57. https://doi.org/10.1080/07055900.2023.2184321 Queen Charlotte Strait, Finite Volume Community Ocean Model (FVCOM), coastal modelling, tidal current, residual flow, wind-driven current, river runoffs, complex empirical orthogonal function
Burgers, T.M., Miller, L.A., Rysgaard, S., Mortensen, J., Else, B., Tremblay, J.É. and Papakyriakou, T., (2023). Distinguishing Physical and Biological Controls on the Carbon Dynamics in a High‐Arctic Outlet Strait. Journal of Geophysical Research: Oceans, 128(3), https://doi.org/10.1029/2022JC019393 Nares Strait; Arctic; Algal bloom; Dissolved inorganic carbon; West Greenland Current; Halocline
Vagle, S. and Carmack, E., (2023). Annual patterns of stratification, mixing and ventilation in long, deep, seasonally ice-covered François lake, British Columbia, Canada. Frontiers in Earth Science, 11, p.1090124. https://www.frontiersin.org/articles/10.3389/feart.2023.1090124 seasonal stratification, deep lakes, mixing, ventilation, lake productivity
Howatt, T., Ross, T. and Waterman, S., (2022). Canyon downwelling and water mass influences on winter zooplankton distributions in the coastal Northeast Pacific. Journal of Geophysical Research: Oceans, 127(11), p.e2022JC018540. https://doi.org/10.1029/2022JC018540 submarine canyons, winter conditions, water mass variability, bio-physical interactions, zooplankton acoustics, ocean gliders
Wang, Y., Bass, A.L., Hinch, S.G., Li, S., Di Cicco, E., Kaukinen, K.H., Ferguson, H., Ming, T.J., Patterson, D.A. and Miller, K.M., (2023). Infectious agents and their physiological correlates in early marine Chinook salmon (Oncorhynchus tshawytscha). Conservation Physiology, 11(1), p.coad031. https://doi.org/10.1093/conphys/coad031 Chinook Salmon, piscine orthoreovirus, jaundice/anemia, virus
Harper, S.J., Burt, J.M., Nelson, L.K., Runnebaum, J.M., Cullen, A., Levin, P.S., Hunter, K.L., McIsaac, J. and Ban, N.C., (2023). Commercial fisher perceptions illuminate a need for social justice considerations in navigating climate change impacts on fisheries systems. Ecology and Society, 28(2). https://doi.org/10.5751/ES-14142-280221 Site selection, Restoration, Mussel beds, Green-lipped mussels, Substrate Composition
Yurk, H., Quayle, L., Burnham, R., MacConnachie, S., LeBlond, T., (2023). Evaluating the effectiveness of shore cabled hydrophone networks as near real-time killer whale detection and tracking systems with special reference to DFO’s Whale Tracking Network (WTN). Can. Tech. Rep. Fish. Aquat. Sci. 3543: ix + 69 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41115223.pdf Whale tracking network, shore cabled hydrophone, killer whales
Karl W. Mueller, Andrew D. Suhrbier, Emaline M. Montgomery,(2024) Chapter 11 - Aspects of the relationship between the giant red sea cucumber, Apostichopus californicus, and the Indigenous People of the Northwest Coast of North America, Editor(s): Annie Mercier, Jean-François Hamel, Andrew D. Suhrbier, Christopher M. Pearce,The World of Sea Cucumbers, Academic Press,Pages 149-159,ISBN 9780323953771, https://doi.org/10.1016/B978-0-323-95377-1.00047-3. Echinoderm, language and culture, subsistence harvest, traditional diet, Native Alaskans, Canadian First Nations, Treaty Tribes of Washington State
Westfall, K.M., Singer, G.A., Kaushal, M., Gilmore, S.R., Fahner, N., Hajibabaei, M. and Abbott, C.L., (2023). NAMERS: a purpose-built reference DNA sequence database to support applied eDNA metabarcoding. bioRxiv, pp.2023-10 https://doi.org/10.1101/2023.10.06.561210 Environmental DNA, freshwater fish, British Columbia
Bass, A.L., Bateman, A.W., Kaukinen, K.H., Li, S., Ming, T., Patterson, D.A., Hinch, S.G. and Miller, K.M., (2023). The spatial distribution of infectious agents in wild Pacific salmon along the British Columbia coast. Scientific Reports, 13(1), p.5473. https://doi.org/10.1038/s41598-023-32583-8 Environmental DNA, Pacific Salmon, Winter, Gulf of Alaska, Pathogens, Stressors
Burgers, T.M., Miller, L.A., Rysgaard, S., Mortensen, J., Else, B., Tremblay, J.É. and Papakyriakou, T., (2023). Distinguishing Physical and Biological Controls on the Carbon Dynamics in a High‐Arctic Outlet Strait. Journal of Geophysical Research: Oceans, 128(3), p.e2022JC019393. https://doi.org/10.1029/2022JC019393 Dissolved Inorganic Carbon, Fresh-Water, Nares Strait, Sea-Ice, Baffin-Bay, Internal Consistency, North Water, Ocean, Atlantic, Greenland
Franco, A.C., Ianson, D., Ross, T., Hannah, C., Sastri, A. and Tortell, P.D., (2023). Drivers and potential consequences of observed extreme hypoxia along the Canadian Pacific continental shelf. Geophysical Research Letters, 50(6), p.e2022GL101857. https://doi.org/10.1029/2022GL101857 deoxygenation, extreme event, northeast Pacific, British Columbia, Pacific halibut
Esposito, G., Donnet, S., Berta, M., Shcherbina, A. Y., Freilich, M., Centurioni, L., et al. (2023). Inertial oscillations and frontal processes in an Alboran Sea jet: Effects on divergence and vertical transport. Journal of Geophysical Research: Oceans, 128, e2022JC019004. https://doi.org/10.1029/2022JC019004 vertical transport from surface divergence pattern, near-inertial oscillations, frontal instabilities, Alboran Sea (Med Sea), drifters, slab model
Reidy, R., Gauthier, S., Doniol-Valcroze, T., Lemay, M.A., Clemente-Carvalho, R.B., Cowen, L.L. and Juanes, F., (2023). Integrating technologies provides insight into the subsurface foraging behaviour of a humpback whale (Megaptera novaeangliae) feeding on walleye pollock (Gadus chalcogrammus) in Juan de Fuca Strait, Canada. Plos one, 18(3), p.e0282651. https://doi.org/10.1371/journal.pone.0282651 Baleen Whales, Blue Whales, Prey, Noise, Performance, Engulf Ment, Kinematics, Energetics, Diversity, Selection
Nemati, F., Leonard, L., Thomson, R., Lintern, G. and Kouhi, S., (2023). Numerical modeling of a potential landslide-generated tsunami in the southern Strait of Georgia. Natural Hazards, 117(2), pp.2029-2054. https://doi.org/10.1007/s11069-023-05854-w Landslide tsunami simulation, Subaerial landslide, Tsunami coastal hazard modeling, FUNWAVE Total Variation Diminishing (FTVD), Non-Hydrostatic WAVE (NHWAVE)
Pilkington, J.F., Stredulinsky, E.H., Gavrilchuk, K., Thornton, S.J., Ford, J.K. and Doniol-Valcroze, T., (2023). Patterns of winter occurrence of three sympatric killer whale populations off eastern Vancouver Island, Canada, based on passive acoustic monitoring. Frontiers in Marine Science, 10, p.1204908. https://doi.org/10.3389/fmars.2023.1204908 passive acoustic monitoring, habitat use, residence, Strait of Georgia, killer whale, Orcinus orca
Sutherland, B.J., Duguid, A., Beacham, T.D. and Tucker, S., (2023). Population genomics of harbour seal Phoca vitulina from northern British Columbia through California and comparison to the western Atlantic sub-species. bioRxiv, pp.2023-05. https://doi.org/10.1101/2023.05.12.540438 Genetic diversity, genotyping, harbour seal
MacConnachie, S., Wade, J., and Flostrand, L. (2023). Speckled Dace (Rhinichthys osculus) abundance in critical habitat on the West Kettle River. Can. Manuscr. Rep. Fish. Aquat. Sci. 3265: v + 14 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41187775.pdf Speckled dace, species at risk, kettle river
Nielsen, M.L.K., Ellis, S., Weiss, M.N., Towers, J.R., Doniol-Valcroze, T., Franks, D.W., Cant, M.A., Ellis, G.M., Ford, J.K., Malleson, M. and Sutton, G.J.,et al (2023). Temporal dynamics of mother–offspring relationships in Bigg's killer whales: opportunities for kin-directed help by post-reproductive females. Proceedings of the Royal Society B, 290(2000), p.20230139. https://doi.org/10.1098/rspb.2023.0139 Social dynamics, kinship dynamics, Orcinus orca, Life history evolution, Menopause
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Brown, T.M., Ogloff, W.R., Yurkowski, D.J., Coffey, J., Stenson, G. and Sjare, B., (2023). Divergent habitat use and the influence of sea ice concentration on the movement behaviour of ringed seals Pusa hispida in Labrador, Canada. Marine Ecology Progress Series, 710, pp.137-153. https://doi.org/10.3354/meps14280 Satellite telemetry, Climate change, Sea ice, Contaminants, Methyl mercury, Polychlorinated biphenyls
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Fu, Y., Lozier, M.S., Biló, T.C. et al. Seasonality of the Meridional Overturning Circulation in the subpolar North Atlantic. Commun Earth Environ 4, 181 (2023). https://doi.org/10.1038/s43247-023-00848-9 Deep-Water Formation, Interannual Variability, Labrador Sea, Heat, Convection, Recovery, Amoc
Kânoğlu, U., Rabinovich, A.B., Okal, E.A. et al. Introduction to “Sixty Years of Modern Tsunami Science, Volume 2: Challenges”. Pure Appl. Geophys. 180, 1541–1547 (2023). https://doi.org/10.1007/s00024-023-03301-2 Tsunami observations, tsunami modelling, tsunami forecasting, tsunami hazard assessment
Sutherland, T.F., Hoyle, M.A., Burnham, R., O’Neill, C., Galvao, M.A., Amos, C.L., Mortimor, J., Covert, P.A. (2023). Meiofaunal Diversity and Sediment Attributes in Burrard Inlet and Fraser River Delta, British Columbia, Canada. Can. Tech. Rep. Fish. Aquat. Sci. 3522: xviii + 91 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41117244.pdf Meiofauna, Subtidal, Sediment, Burrard Inlet, Fraser Delta, British Columbia
King, J.R., Tabata, A.M., Dennis-Bohm, H., Zubkowski, T.B., Flynn, K.L., and Boldt, J. (2023). Integrated Pelagic Ecosystem Survey on the Vancouver Island Continental Shelf, July 4 - August 2, 2022. Can. Tech. Rep. Fish. Aquat. Sci. 3545: vii + 102 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41120310.pdf pacific salmon, trawl survey, northeast pacific, Gulf of Alaska
Levings, C.D., Nishimura, D.J.H, Gregr, E., Whitehouse, T.R., Herunter, H., and Bates, C.R. (2023). Variation in juvenile Chinook salmon (Oncorhynchus tshawytscha) diets across the channel and habitats of the lower Fraser River, British Columbia, Canada. Can. Tech. Rep. Fish. Aquat. Sci. 3548: viii + 22 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41118972.pdf Chinook salmon diets, channel and habitats of the lower Fraser River
Jeffery, S., Thompson, P.L., St. Germain, C., Murray, C., Nelson, J., Proudfoot, B., Agbayani, S., Finney, J., Rubidge, E.M., Serra Sogas, N., Wade, J., Dudas, S., Robb, C.K. (2023). Conceptual models of major ecosystems in Canada’s Pacific Ocean. Can. Tech. Rep. Fish. Aquat. Sci. 3556: ix + 228 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41198888.pdf Conceptual models, Marine ecosystems, Ecosystem major species, Environmental Drivers, Human Activities, Rocky shores, soft shores, Rocky subtidal, Soft bottom subtidal, Estuaries, Fjords, Pelagic, Seamounts, Hydrothermal vents, Bathyal plains, Cold seeps
Marques, T.P., Cote, M., Rezvanifar, A., Slonimer, A., Albu, A.B., Ersahin, K. and Gauthier, S., (2023). U-MSAA-Net: A Multiscale Additive Attention-Based Network for Pixel-Level Identification of Finfish and Krill in Echograms. IEEE Journal of Oceanic Engineering. https://doi.org/10.1109/JOE.2023.3252759 Acoustics, Backscatter, Feature extraction, Oceans, Aquaculture, Additives, Task analysis, Adaptive signal processing, additive attention, computer vision, deep learning, multifrequency echograms, semantic segmentation
Steinberg, D. K., Stamieszkin, K., Maas, A. E., Durkin, C. A., Passow, U., Estapa, M. L., et al. (2023). The outsized role of salps in carbon export in the subarctic Northeast Pacific Ocean. Global Biogeochemical Cycles, 37, e2022GB007523. https://doi.org/10.1029/2022GB007523 mesopelagic zone, gelatinous zooplankton, diel vertical migration, fecal pellet, particle flux, respiration, biological carbon pump
Lo, B.P., Marlatt, V.L., Liao, X., Reger, S., Gallilee, C., Ross, A.R.S. and Brown, T.M. (2023), Acute Toxicity of 6PPD-Quinone to Early Life Stage Juvenile Chinook (Oncorhynchus tshawytscha) and Coho (Oncorhynchus kisutch) Salmon. Environ Toxicol Chem, 42: 815-822. https://doi.org/10.1002/etc.5568 Aquatic toxicology, Contaminants of emerging concern, Contaminants,N‐(1,3‐dimethylbutyl)‐N'‐phenyl‐p‐phenylenediamine‐quinone (6PPD)‐6‐PPD‐quinone, Chinook salmon, Coho salmon
Jessica Nephin, Patrick L. Thompson, Sean C. Anderson, Ashley E. Park, Christopher N. Rooper, Brendan Aulthouse, and Joe Watson. (2023). Integrating disparate survey data in species distribution models demonstrate the need for robust model evaluation. Canadian Journal of Fisheries and Aquatic Sciences. e-First https://doi.org/10.1139/cjfas-2022-0279 species distribution modelling, data integration, Gaussian random fields, Dungeness crab
Rabinovich, A.B., Hannah, C.G. and Krassovski, M.V., (2023). Tidal Currents in Douglas Channel, British Columbia: Evaluation and Prediction. Water, 15(13), p.2441. https://doi.org/10.3390/w15132441 Douglas Channel, tidal currents, Acoustic Doppler Current Profilers (ADCP), barotropic and baroclinic tides, time series analysis, predictability
Burnham, R. and Duffus, D., (2023). Implication of Altered Acoustic Active Space for Cetacean Species That Result from Soundscape Changes and Noise Additions. Acoustics (Vol. 5, No. 2, pp. 444-461). https://doi.org/10.3390/acoustics5020026 acoustics active space, niche, disturbance, masking, mitigation measures
Burnham, R., ( 2023). Animal calling behaviours and what this can tell us about the effects of changing soundscapes. Acoustics (Vol. 5, No. 3, pp. 631-652). https://doi.org/10.3390/acoustics5030039 acoustic ecology, soundscape, vocal repertoire, call acquisition, active space, learning, culture, niche space definitions
Simond, A.É., Ross, P.S., Cabrol, J., Lesage, V., Lair, S., Woudneh, M.B., Yang, D., Peng, H., Colbourne, K. and Brown, T.M., (2023). Declining concentrations of chlorinated paraffins in endangered St. Lawrence Estuary belugas (Delphinapterus leucas): Response to regulations or a change in diet?. Science of the Total Environment, 868, p.161488. https://doi.org/10.1016/j.scitotenv.2023.161488 Chlorinated paraffin, Beluga whale, Temporal trend, Feeding ecology, Stable isotope
Shartau, R.B., Turcotte, L.D., Bradshaw, J.C., Ross, A.R., Surridge, B.D., Nemcek, N. and Johnson, S.C., (2023). Dissolved Algal Toxins along the Southern Coast of British Columbia Canada. Toxins, 15(6), p.395. https://doi.org/10.3390/toxins15060395 microcystin, okadaic acid, domoic acid, Solid Phase Adsorption Toxin Tracking (SPATT), harmful algae, aquaculture, marine phycotoxins
Pearce, C.M., Gartrell, J.W., King, X.K. and Duff, S.D.Z., (2024). Perspectives on sea cucumber knowledge syntheses. In The World of Sea Cucumbers (pp. 17-37). Academic Press https://doi.org/10.1016/B978-0-323-95377-1.00014-X Holothurian, Holothuroid, literature, reviews, sea cucumber, synthesis
Boldt, J.L., Joyce, E., Tucker, S., and Gauthier, S. (Eds.). (2023). State of the physical, biological and selected fishery resources of Pacific Canadian marine ecosystems in 2022. Can. Tech. Rep. Fish. Aquat. Sci. 3542: viii + 312 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41199248.pdf Pacific Ocean, oceanographic conditions 2022, biological conditions in 2022
DeFrancesco, C., Guéguen, C., Williams, W. J., & Zimmermann, S. (2023). Interannual variability of fluorescent dissolved organic matter composition in the Canada Basin, Arctic Ocean from 2007 to 2017. Journal of Geophysical Research: Oceans , 128, e2022JC018919. https://doi.org/10.1029/2022JC018919 humic-like, apparent oxygen utilization, Parallel factor analysis (PARAFAC), temporal analysis
Han, G., & Lu, J. (2023). Extreme sea levels and their attribution for the Canadian Pacific coast from a baroclinic regional ocean model and tide-gauge data. Journal of Geophysical Research: Oceans, 128, e2022JC019482. https://doi.org/10.1029/2022JC019482 extreme sea level, ocean modeling, storm surge, intra-seasonal and seasonal variability, interannual variability, tides
Kim, J.J., Delisle, K., Brown, T.M., Ross, P.S. and Noël, M., (2023). Sediment Spatial Distribution and Quality Assessment of Metals in Chinook Salmon and Resident Killer Whale Marine Habitat in British Columbia, Canada. Archives of Environmental Contamination and Toxicology, 85, 85(1), pp.73-91. https://doi.org/10.1007/s00244-023-01013-1 Heavy-Metals, Benthic Invertebrates, Oncorhynchus-Tshawytscha, Dietary Mercury, Organic-Carbon, Trace-Elements, Rainbow-Trout, Pacific Coast, Contamination, Copper
Pućko, M., Rourke, W., Hussherr, R., Archambault, P., Eert, J., Majewski, A.R., Niemi, A., Reist, J. and Michel, C., (2023). Phycotoxins in bivalves from the western Canadian Arctic: The first evidence of toxigenicity. Harmful Algae, 127, p.102474. https://doi.org/10.1016/j.hal.2023.102474 Phycotoxins, Arctic, Canada, Domoic acid, Saxitoxin, Amnesic Shellfish Toxin (AST), Paralytic Shellfish Toxin (PST), Pseudo-nitzschia
Sims, R. P., Ahmed, M. M. M., Butterworth, B. J., Duke, P. J., Gonski, S. F., Jones, S. F., Brown, K. A., Mundy, C. J., Williams, W. J., and Else, B. G. T.,(2023). High interannual surface pCO2 variability in the southern Canadian Arctic Archipelago's Kitikmeot Sea, Ocean Sci., 19, 837–856, https://doi.org/10.5194/os-19-837-2023. Phytoplankton Blooms, Arctic Archipelago, Coastal Waters, Carbonic-Acid, Gas-Exchange, Co2 Uptake, Ice-Edge, Seawater, Flux, Dissociation
Brown, T.M., Holbert, S., Gallilee, C.A., Colbourne, K. (2023). Sediment contaminant concentrations from outside Southern and Northern Resident Killer Whale Critical Habitat, British Columbia in 2020. Can. Data Rep. Fish. Aquat. Sci. 1372: ix + 42 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41193799.pdf Phycotoxins, Arctic, Canada, Domoic acid, Saxitoxin, Amnesic Shellfish Toxin (AST), Paralytic Shellfish Toxin+E93+F93+E95+E95
Planchat, A., Kwiatkwoski, L., Bopp, L., Torres, O., Christian, J. R., Butenschön, M., Lovato, T., Séférian, R., Chamberlain, M. A., Aumont, O., Watanabe, M., Yamamoto, A., Yool, A., Ilyina, T., Tsujino, H., Krumhardt, K. M., Schwinger, J., Tjiputra, J., Dunne, J. P., and Stock, C., (2022).The representation of alkalinity and the carbonate pump from CMIP5 to CMIP6 ESMs and implications for the ocean carbon cycle, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2022-1041, 2022. Biology, Coupled Model Intercomparison, Carbon cycle, Aragonite, Calcite, Ocean acidification, Biogeochemistry, Calcification, Alkalinity, Water circulation, Water column, Seawater, Carbon emissions, pH, Saturation, Uptake, Surface water, Dissolving, Dissolved inorganic carbon, Human influences, Calcium carbonate, General circulation models, Acidification, Precipitation, Carbon uptake, Dissolution, Benthos, Intercomparison, Simulation, Salinity, Oceanic analysis, Anthropogenic factors, Modelling, Calcium carbonates, Oceans, Representations, Budgets, Emissions, Carbon sequestration, Biological production, Marine ecosystems, Climate models, Atmospheric models, Environmental impact, Ocean circulation, Carbonates, Calcium
Thompson, P.L., Nephin, J., Davies, S.C., Park, A.E., Lyons, D.A., Rooper, C.N., Angelica Peña, M., Christian, J.R., Hunter, K.L., Rubidge, E. and Holdsworth, A.M., (2023). Groundfish biodiversity change in northeastern Pacific waters under projected warming and deoxygenation. Philosophical Transactions of the Royal Society B, 378(1881), p.20220191. https://doi.org/10.1098/rstb.2022.0191 climate change, regional ocean model,dissolved oxygen, hypoxia, depth,species distribution
Rooper, C.N., Boldt, J.L., Cleary, J., Peña, M.A., Thompson, M. and Grinnell, M., (2023). Evaluating factors affecting the distribution and timing of Pacific Herring Clupea pallasii spawn in British Columbia. Marine Ecology Progress Series. https://doi.org/10.3354/meps14274 Spawn timing, Spatial distribution, Pacific herring, British Columbia, Species distribution modeling, Random forest
Peña, M.A. and Fine, I., (2024). Future physical and biogeochemical ocean conditions under climate change along the British Columbia continental margin. Atmosphere-Ocean, 62(1), pp.2-23. https://doi.org/10.1080/07055900.2023.2239186 climate change, British Columbia coast, regional climate model, biogeochemistry, downscaled projections
Simond, A.É., Ross, P.S., Cabrol, J., Lesage, V., Lair, S., Woudneh, M.B., Yang, D., Peng, H., Colbourne, K. and Brown, T.M., (2023). Declining concentrations of chlorinated paraffins in endangered St. Lawrence Estuary belugas (Delphinapterus leucas): Response to regulations or a change in diet?. Science of the Total Environment, 868, p.161488. https://doi.org/10.1016/j.scitotenv.2023.161488 Chlorinated paraffin, Beluga whale, Temporal trend, Feeding ecology, Stable isotope
Lo, B.P., Marlatt, V.L., Liao, X., Reger, S., Gallilee, C., Ross, A.R. and Brown, T.M., (2023). Acute Toxicity of 6PPD‐Quinone to Early Life Stage Juvenile Chinook (Oncorhynchus tshawytscha) and Coho (Oncorhynchus kisutch) Salmon. Environmental Toxicology and Chemistry, 42(4), pp.815-822. https://doi.org/10.1002/etc.5568 Aquatic toxicology, Chinook salmon, Coho salmon, Contaminants, Contaminants of emerging concern, N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine-quinone (6PPD)-6-PPD-quinone.
Kim, J.J., Delisle, K., Brown, T.M., Ross, P.S. and Noël, M., (2023). Sediment Spatial Distribution and Quality Assessment of Metals in Chinook Salmon and Resident Killer Whale Marine Habitat in British Columbia, Canada. Archives of Environmental Contamination and Toxicology, 85(1), pp.73-91. https://doi.org/10.1007/s00244-023-01013-1 Cadmium, Lead, Mercury, Arsenic, Nickel, Heavy Metals, Chemical Water Pollutants, Chemical, Index Medicus, Environmental Monitoring, Animals, Salmon, Ecosystem, British Columbia, Lead - analysis, Cadmium - analysis, Geologic Sediments - analysis, Chemical Water Pollutants - analysis, Heavy Metals - analysis, Mercury - analysis, Killer Whale, Arsenic - analysis
Arbeider, M., Pemberton-Renaud, V., Hodgson, E.E. and Moore, J.W., (2023). The estuarine growth and residency of juvenile Pacific salmon in North America: a compilation of empirical data. Canadian Journal of Fisheries and Aquatic Sciences. 81(3): 253-267. https://doi.org/10.1139/cjfas-2023-0225 Pacific salmon, estuaries, growth, residency, systematic review
Slonimer, A.L., Dosso, S.E., Albu, A.B., Cote, M., Marques, T.P., Rezvanifar, A., Ersahin, K., Mudge, T. and Gauthier, S., (2023). Classification of Herring, Salmon, and Bubbles in Multifrequency Echograms Using U-Net Neural Networks. IEEE Journal of Oceanic Engineering. https://doi.org/10.1109/JOE.2023.3272393 Aquaculture, deep learning, oceans, semantic segmentation, underwater acoustics
Garzke, J., Forster, I., Graham, C., Costalago, D. and Hunt, B.P., (2023). Future climate change-related decreases in food quality may affect juvenile Chinook salmon growth and survival. Marine Environmental Research, 191, p.106171. https://doi.org/10.1016/j.marenvres.2023.106171 Zooplankton, essential fatty acids, RNA:DNA ratio, fish condition, mortality, growth, docosahexaenoic acid (DHA), eicosapentaenoic acid (EPA), DHA:EPA ratios
Freshwater, C., Anderson, S.C., Huff, D.D., Smith, J.M., Jackson, D., Hendriks, B., Hinch, S.G., Johnston, S., Trites, A.W. and King, J., (2024). Chinook salmon depth distributions on the continental shelf are shaped by interactions between location, season, and individual condition. Movement Ecology, 12(1), p.21. https://doi.org/10.1186/s40462-024-00464-y Habitat use, telemetry, seasonality, Regional Ocean Modeling System (ROMS), continental shelf, bathymetry, machine learning models
Pestal, G., MacDonald, B.L., Grant, S.C.H., and Holt, C.A. (2023). State of the Salmon: rapid status assessment approach for Pacific salmon under Canada’s Wild Salmon Policy. Can. Tech. Rep. Fish. Aquat. Sci. 3570: xiv + 200 p. https://science-catalogue.canada.ca/record=b4120789~S6 status, Wild Salmon Policy, Pacific salmon, Wild Salmon Policy Integrated status, Wild Salmon Policy (WSP) rapid status
Du Preez, C., Amon, D. J., Baco, A. R., Best, M., Clyde, G., Colaço, A., Gartner, H., Lauer, R.M., Orcutt, B. N., Metaxas, A. and Tunnicliffe, V. (2023). Identification of Ecologically or Biologically Significant Marine Areas (EBSAs) in Areas Beyond National Jurisdiction (ABNJ): the Northwest Pacific Seamounts. Can. Tech. Rep. Fish. Aquat. Sci. 3571: vi + 21 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41209217.pdf Seamounts, Ecologically and Biologically Significant Areas (EBSAs), Northwest Pacific
Sutherland, T.F., Levings, C.D., Keong, V., MacLean, H., and Piercey, G.E. (2023). Shrimp and Fish Abundance Observed by a Towed-Video Along Trawling and Trapping Transects in Simoom Sound, British Columbia, Canada. Can. Dat. Rep. Fish. Aquat. Sci. 1378: vii + 39 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41210712.pdf Fishing Gear, Trawling, Trapping, Benthic Video, Shrimp, Simoom Sound, British Columbia.
Cristiani, J.M., Bannar-Martin, K.H, and Rubidge, E.M. (2023). Quantifying shoreline modifications adjacent to eelgrass meadows in the Strait of Georgia Bioregion. Can. Tech. Rep. Fish. Aquat. Sci. 3574: vi + 18 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41211856.pdf eelgrass, human impacts, mapping
Eguiguren, A., Konrad Clarke, C.M., Cantor, M. (2023). Sperm Whale Reproductive Strategies: Current Knowledge and Future Directions. In: Würsig, B., Orbach, D.N. (eds) Sex in Cetaceans. Springer, Cham. https://doi.org/10.1007/978-3-031-35651-3_19 alloparental care, convergent evolution, intra-sexual competition, mate choice, sexual dimorphism
Bryce, K. and Hunter, K.L., (2024). Enhancing climate change planning and adaptive management in marine protected areas through targets, thresholds, and social-ecological objectives. Frontiers in Marine Science, 11, p.1339871. https://doi.org/10.3389/fmars.2024.1339871 benchmarks, triggers, monitoring, quantitative decision criteria, adaptation
Yonemitsu, M.A., Sevigny, J.K., Vandepas, L.E., Dimond, J.L., Giersch, R.M., Gurney-Smith, H.J., Abbott, C.L., Supernault, J., Withler, R., Smith, P.D. and Weinandt, S.A., (2023). Multiple lineages of transmissible neoplasia in the basket cockle (Clinocardium nuttallii) with repeated horizontal transfer of mitochondrial DNA. bioRxiv, pp.2023-10. https://doi.org/10.1101/2023.10.11.561945 Transmissible neoplasia, basket cockle, horizontal transfer
Sutherland, B.J., Finke, J.F., Saunders, R., Warne, S., Schulze, A.D., Strohm, J.H., Chan, A.M., Suttle, C.A. and Miller, K.M., (2023). Metatranscriptomics reveals a shift in microbial community composition and function during summer months in a coastal marine environment. Environmental DNA, 5(5), pp.920-933. https://doi.org/10.1002/edn3.353 metatranscriptome assembly, metatranscriptomics, microbial community, oyster, pCO2, seasonality
Bass, A.L., Bateman, A.W., Kaukinen, K.H. et al. The spatial distribution of infectious agents in wild Pacific salmon along the British Columbia coast. Sci Rep13, 5473 (2023). https://doi.org/10.1038/s41598-023-32583-8 Pacific salmon, Pathogen, Spatial models, Species distribution, Molecular ecology
Curtis, D.L., Pearce, C.M., van Dam-Bates, P., Duprey, N.M., Cross, S.F. and Cowen, L.L., (2023). California sea cucumber (Apostichopus californicus) abundance and movement on a commercial shellfish aquaculture farm. Diversity, 15(8), p.940. https://doi.org/10.3390/d15080940 California sea cucumber, Dive survey, Holothuroid, Ocean ranching, Sedimentation, Shellfish aquaculture
Tabata, A.T., Flynn, K.L., Zubkowski, T.B., and King, J.R. (2024). Ecosystem-Based Juvenile Pacific Salmon (Oncorhynchus spp.) Trawl Survey off North and West Coast Vancouver Island, British Columbia, October 8 - 23, 2022. Can. Data Rep. Fish. Aquat. Sci. 1384: vi + 51 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/4122274x.pdf salmon, juvenile, marine ecosystem, survey, trawl, British Columbia
Acharya-Patel, N., Groenwold, E., Lemay, M.A., Clemente-Carvalho, R., Morien, E., Dudas, S., Rubidge, E., Yang, C.L., Coombe, L., Warren, R.L. and Frid, A., (2024). Comparison of environmental DNA and SCUBA diving methods to survey keystone rockfish species on the Central Coast of British Columbia, Canada. Ecological Indicators, 160, p.111830. https://doi.org/10.1016/j.ecolind.2024.111830 Marine conservation, Biodiversity monitoring, Conservation, Methods development, SCUBA diving, eDNA, unikseq, mtGrasp, Full mitogenome-based eDNA assay design
Zhong, K.X., Chan, A.M., Collicutt, B., Daspe, M., Finke, J.F., Foss, M., Green, T.J., Harley, C.D., Hesketh, A.V., Miller, K.M. and Otto, S.P., (2024). The prokaryotic and eukaryotic microbiome of Pacific oyster spat is shaped by ocean warming but not acidification. Applied and Environmental Microbiology, pp.e00052-24. https://doi.org/10.1128/aem.00052-24 Pacific Oyster, microbiome, spat, mortality, pathogen
Tigano, A., Weir, T., Ward, H.G., Gale, M.K., Wong, C.M., Eliason, E.J., Miller, K.M., Hinch, S.G. and Russello, M.A., (2024). Genomic vulnerability of a freshwater salmonid under climate change. Evolutionary Applications, 17(2), p.e13602. https://doi.org/10.1111/eva.13602 Kokanee, genomics, climate change
Cho, A., Finke, J.F., Zhong, K.X., Chan, A.M., Saunders, R., Schulze, A., Warne, S., Miller, K.M. and Suttle, C.A., (2023). The core microbiome of cultured Pacific oyster spat develops with age but not mortality. bioRxiv, pp.2023-10. https://doi.org/10.1101/2023.10.27.564467 Pacific Oyster, microbiome, spat, mortality, pathogen
Elmer, L.K., Bass, A.L., Johnston, S.D., Kaukinen, K.H., Kelly, L.A., Li, S., Teffer, A.K., Miller, K.M., Cooke, S.J. and Hinch, S.G., (2023). Changes in infectious agent profiles and host gene expression during spawning migrations of adult sockeye salmon (Oncorhynchus nerka). Canadian Journal of Fisheries and Aquatic Sciences, 80(8), pp.1313-1334. https://doi.org/10.1139/cjfas-2022-0132 salmon, freshwater, infectious agents, thermoregulation, gene expression
Hughes, B.B., Beheshti, K.M., Tinker, M.T. et al. (2024) Top-predator recovery abates geomorphic decline of a coastal ecosystem. Nature 626, 111–118 (2024). https://doi.org/10.1038/s41586-023-06959-9 trophic cascade, sea otter colonization, coastal marsh
Liu, Owen R., et al. (2023) Species redistribution creates unequal outcomes for multispecies fisheries under projected climate change. Science Advances 9.33 (2023): eadg5468. https://www.science.org/doi/10.1126/sciadv.adg5468 distribution changes, climate change, local scale, primary species, secondary species
Hajas, W. and Atkins, M., (2024). Estimating seasonal Pacific geoduck clam Panopea generosa show‐factors from long‐term observation. North American Journal of Fisheries Management, 44(1), pp.162-171. https://doi.org/10.1002/nafm.10968 geoduck abundance, detectability, stock assessment
Frid, A., Wilson, K.L., Walkus, J., Forrest, R.E. and Reid, M., (2023). Re‐imagining the precautionary approach to make collaborative fisheries management inclusive of Indigenous Knowledge Systems. Fish and Fisheries, 24(6), pp.940-958. https://doi.org/10.1111/faf.12778 Precautionary Approach (PA) policy, Indigenous co-governance, Biological reference points
Diack, Graeme, et al., (2023). Salmon Data Mobilization. https://osf.io/preprints/osf/hk4gu salmon, data mobilization, research community, (Findable, Accessible, Interoperable and Reusabl (FAIR)), research culture
Ruggerone, G.T., Springer, A.M., van Vliet, G.B., Connors, B., Irvine, J.R., Shaul, L.D., Sloat, M.R. and Atlas, W.I., (2023). From diatoms to killer whales: impacts of pink salmon on North Pacific ecosystems. Marine Ecology Progress Series, 719, pp.1-40. https://doi.org/10.3354/meps14402 North Pacific ecosystems, Oncorhynchus gorbuscha, Competition, Trophic cascade, Carrying capacity, Climate change, Ocean heating, Ecosystem services
Murdoch, A., Connors, B.M., Lapointe, N.W., Mills Flemming, J., Cooke, S.J. and Mantyka-Pringle, C., (2023). Multiple environmental drivers across life stages influence Yukon River Chinook salmon productivity. Canadian Journal of Fisheries and Aquatic Sciences, 81(1), pp.97-114. https://doi.org/10.1139/cjfas-2022-0254 climate change, subsistence, cumulative effects, spawner recruitment, management
Lacko, L.C., Temple, K.L., Holt, K.R., Supernault, J.K., Kronlund, A.R., Wyeth, M.R., and Connors, B.M. (2023). Development of methods in support of a head-only sampling program for Sablefish (Anoplopoma fimbria) in British Columbia. Can. Tech. Rep. Fish. Aquat. Sci. 3580: vi + 19 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41213464.pdf biological sampling, tag recovery, DNA-based sex identification, length
Lagasse, C.R., Czembor, C.A., Huang, A.-M., Dobson, D. (2024). DFO Pacific Salmon Science Workshop 2022: Addressing conservation and management challenges now and into the future. Can. Manuscr. Rep. Fish. Aquat. Sci. 3267: v + 43 p. https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/41222738.pdf salmon conservation, data management, integrated life history assessment, climate change, collaboration
Bianucci, L., Jackson, J., Allen, S.E., Krassovski, M. and Giesbrecht, I., (2023). Persistence of a Subsurface Water Mass in a Deep Mid-Latitude Fjord. EGUsphere, 2023, pp.1-20. https://doi.org/10.5194/egusphere-2023-2014 Bute Inlet, Discovery Islands, Finite Volume Community Ocean Model (FVCOM), Coastal Modelling, Circulation, Temperature Minimum, Oxygen Maximum
Anderson, M.A., Fisk, A.T., Laing, R., Noël, M., Angnatok, J., Kirk, J., Evans, M., Pijogge, L. and Brown, T.M., (2023). Changing environmental conditions have altered the feeding ecology of two keystone Arctic marine predators. Scientific Reports, 13(1), p.14056. https://doi.org/10.1038/s41598-023-39091-9 charr salvelinus-alpinus, seals pusa hispida, ringed seals, food-web, stable-isotopes, fish communities, growth, mercury, climate, water, Science & Technology - Other Topics
Nemcek, N., Hennekes, M., Sastri, A. and Perry, R.I., (2023). Seasonal and spatial dynamics of the phytoplankton community in the Salish Sea, 2015–2019. Progress in Oceanography, 217, p.103108. https://doi.org/10.1016/j.pocean.2023.103108 Phytoplankton, phytoplankton monitoring software (CHEMTAX), high-performance liquid chromatography (HPLC), Salish Sea, Heterosigma akashiwo
Johannessen, S.C., (2023). How to quantify blue carbon sequestration rates in seagrass meadow sediment: geochemical method and troubleshooting. Carbon Footprints. 2023, 2(4): 21. http://dx.doi.org/10.20517/cf.2023.37 Sediment, blue carbon, seagrass, sequestration, burial, methodology, remineralization, bioturbation
Johannessen, S.C. and Christian, J.R., (2023). Why blue carbon cannot truly offset fossil fuel emissions. Communications Earth & Environment, 4(1), p.411. https://doi.org/10.1038/s43247-023-01068-x Environmental Sciences & Ecology Geology, Meteorology & Atmospheric, Sciences
Perry, R.I., Nemcek, N., Hennekes, M., Sastri, A., Ross, A.R., Shannon, H. and Shartau, R.B., (2023). Domoic acid in Canadian Pacific waters, from 2016 to 2021, and relationships with physical and chemical conditions. Harmful Algae, 129, p.102530. https://doi.org/10.1016/j.hal.2023.102530 Domoic acid, Pseudo-nitzschia, Harmful algae, Northeast Pacific, Vancouver Island, Salish Sea
Ommer, R.E. and Perry, R.I., (2022). The importance of complexities of scale and context in fisheries research and management. ICES Journal of Marine Science, 79(8), pp.2196-2203. https://doi.org/10.1093/icesjms/fsac156 space, time, institution, interaction, knowledge, motivation.
Suchy, K.D., Olson, E., Allen, S.E., Galbraith, M., Herrmann, B., Keister, J.E., Perry, R.I., Sastri, A.R. and Young, K., (2023). Seasonal and regional variability of model-based zooplankton biomass in the Salish Sea and evaluation against observations. Progress in Oceanography, 219, p.103171. https://doi.org/10.1016/j.pocean.2023.103171 Zooplankton, Salish Sea, Biogeochemical model, Model evaluation, Transboundary studies, Strait of Georgia, Puget Sound
Rutherford, K., Bianucci, L. and Floyd, W., (2024). A simple approach to represent precipitation-derived freshwater fluxes into nearshore ocean models: an FVCOM4. 1 case study. EGUsphere, 2024, pp.1-36. https://doi.org/10.5194/egusphere-2023-3064 Quatsino Sound, Finite Volume Community Ocean Model (FVCOM), Coastal Modelling, Hydrological Model, Nearshore Ocean, Rivers, Freshwater fluxes, land-ocean connection
Drope, N., Morin, E., Kohfeld, K., Ianson, D. and Silver, J.J., (2023). Media Representations and Farmer Perceptions: A Case Study of Reporting on Ocean Acidification and the Shellfish Farming Sector in British Columbia, Canada. Environmental Communication, pp.1-12. https://doi.org/10.1080/17524032.2023.2280873 Climate change, journalisticnorms, local salience, oceans,scientific uncertainty
Blanken, H., Valeo, C., Hannah, C.G. and Khan, U.T., (2023). Propagating Particle Tracking Uncertainty Defined by Fuzzy Numbers in Spatially Variable Velocity Fields. Journal of Marine Science and Engineering, 11(9), p.1752. https://doi.org/10.3390/jmse11091752 uncertainty, fuzzy numbers, particle tracking, hyper-ensemble statistics, surface drift prediction, ocean, dispersion, diffusion, search, rescue, model, Engineering, Oceanography
Ens, N.J., Dower, J.F. and Gauthier, S., (2023). Geographic variability in the seasonality of euphausiid diel vertical migrations among three locations in coastal British Columbia, Canada. ICES Journal of Marine Science, p.fsad177. https://doi.org/10.1093/icesjms/fsad177 active acoustics, biological oceanography, diel vertical migration, euphausiids, predator-prey interactions, time series, zooplankton, southwestern vancouver-island saanich inlet, meganyctiphanes-norvegica, pacific hake, pelagic fish, zooplankton, phytoplankton, dynamics, light, predation, Fisheries, Marine & Freshwater Biology Oceanography
Han, G. and Lu, J., (2023). Extreme Sea Levels and Their Attribution for the Canadian Pacific Coast From a Baroclinic Regional Ocean Model and Tide‐Gauge Data. Journal of Geophysical Research: Oceans, 128(7), p.e2022JC019482. https://doi.org/10.1029/2022JC019482 extreme sea level, ocean modeling, storm surge, intra-seasonal and seasonal variability, interannual variability, tides, north-america, west-coast, variability, Oceanography
Izett, J.G., Mattern, J.P., Moore, A.M. and Edwards, C.A., (2023). Evaluating Alternate Methods of 4D-Var Data Assimilation in a Coupled Hydrodynamic—Four-Component Biogeochemical Model of the California Current System. Ocean Modelling, 185, p.102253. https://doi.org/10.1016/j.ocemod.2023.102253 4D-Var, Biogeochemical data assimilation, Model-reduced 4D-Var, State estimation, variational data assimilation, ensemble kalman filter, coastal ocean, roms, formulation, dynamics, atlantic, impact, Meteorology & Atmospheric Sciences, Oceanography
Ross, A.R., Liao, X. and Brown, T.M., (2023). Simultaneous determination of steroid hormones and pharmaceuticals in killer whale (Orcinus orca) faecal samples by liquid chromatography tandem mass spectrometry. Conservation Physiology, 11(1), p.coad081. https://doi.org/10.1093/conphys/coad081 hemoglobin adducts, fish, metabolites, triclosan, trout, feces, biotransformation toxicokinetics, Biodiversity & Conservation, Environmental Sciences & Ecology, Physiology
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